PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0524s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 358aa    MW: 40424.2 Da    PI: 9.3821
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0524s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.61e-421062883133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          gk drhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k aike +g+                           
  Kalax.0524s0004.1.p 106 GKNDRHSKICTAQGLRDRRMRLSVQIARKFFDLQDALGFDKASKTIEWLFNKSKNAIKEVMGStyhsramdgpqrsnnvgkfdcidnptg 195
                          799************************************************************888888888777777777777766666 PP

                  TCP  66 .......................ssssaseceaesssssasnsssg.......................kaaksaakskksqksaasaln 109
                                                 +                     +                        +++s++ + +++++ ++  +
  Kalax.0524s0004.1.p 196 gygqedlassslvrnedayslnlK---------------------QiattqkickdkdgrnklksvnkqCKSTSKKLKGNNNNQISQCPQ 264
                          666665555555554444444441.....................033444444444444455555533444445544445555555777 PP

                  TCP 110 lakesrakarararertrekmrik 133
                           +k+ r karararert ekmr++
  Kalax.0524s0004.1.p 265 HKKDVRDKARARARERTLEKMRLR 288
                          777999***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.403107165IPR017887Transcription factor TCP subgroup
PfamPF036349.5E-43107286IPR005333Transcription factor, TCP
PROSITE profilePS5137010.065267284IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSPSSFPLAS SSSPALLEED QFFVDHLLFM SQGQQQFFLG HESEPHQLAL VDHQDFVDGM  60
TVAGEFEEEV TPAQESKKKN RVGSSNDKNK NDCRPAKRPN KRIRIGKNDR HSKICTAQGL  120
RDRRMRLSVQ IARKFFDLQD ALGFDKASKT IEWLFNKSKN AIKEVMGSTY HSRAMDGPQR  180
SNNVGKFDCI DNPTGGYGQE DLASSSLVRN EDAYSLNLKQ IATTQKICKD KDGRNKLKSV  240
NKQCKSTSKK LKGNNNNQIS QCPQHKKDVR DKARARARER TLEKMRLRVI EDPNQRPFAA  300
AANPRNLTRS EQIGSCSPFE QVDEISGAQS QSVEELIHAD WDIDSARFYT SYIFDTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-28TCP domain protein 12