PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0528s0015.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 580aa    MW: 64748.7 Da    PI: 6.3082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0528s0015.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24127227198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv+a++L +gD++vF   
  Kalax.0528s0015.2.p 127 FCKVLTASDTSTHGGFSVLRKHATEClppldMSQPTPTQELIGKDLHGMEWRFKHIFRGQPRRHLLTTGWSTFVSAKRLVAGDSFVFL-- 214
                          99****************************9777777889************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Kalax.0528s0015.2.p 215 RGEDGELRVGVRR 227
                          4499*******98 PP
2Auxin_resp90.13.9e-30252330182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          a+ha++ +++F+v+Y+Pr+  s+Fvv+v+k+++a k+ + vG Rfkm+fe++d +er +sGt+vgv ++++ +W +SkWrsL
  Kalax.0528s0015.2.p 252 ASHAVTAQTIFQVFYKPRK--SQFVVSVNKYLEANKSGFGVGKRFKMRFEGDDLPERWFSGTIVGVDNISQ-QWADSKWRSL 330
                          689***************6..9**********************************************666.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-36116241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-40121239IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-20125227No hitNo description
PROSITE profilePS5086312.012127229IPR003340B3 DNA binding domain
PfamPF023621.0E-22127227IPR003340B3 DNA binding domain
SMARTSM010197.7E-23127229IPR003340B3 DNA binding domain
PfamPF065073.3E-27252330IPR010525Auxin response factor
PfamPF023096.7E-8453504IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-13463544No hitNo description
PROSITE profilePS5174526.665468549IPR000270PB1 domain
PfamPF023091.8E-6514553IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MMMMPNRCTN LSGEGVGGDG GLYEELWKAC AGPLVDVPRE RERVYYFPQG HLEQLETSTN  60
QEIDQRITMF NLPSKILCKV LNVYLMAEPE TDEVYAQITL IPEPDQTEPT KPDPCLPEPR  120
RPTVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMSQ PTPTQELIGK DLHGMEWRFK  180
HIFRGQPRRH LLTTGWSTFV SAKRLVAGDS FVFLRGEDGE LRVGVRRLAC QQSNMPSVIS  240
SHSIQLGVLA SASHAVTAQT IFQVFYKPRK SQFVVSVNKY LEANKSGFGV GKRFKMRFEG  300
DDLPERWFSG TIVGVDNISQ QWADSKWRSL RVQWDEPAAI SRPDTVSPWE IENLTPSVPS  360
CISPAIPSKN KRLRPPGDMQ VPGEARKKVD APISCRLFGI ELLNPSTSTP TEKPVMQPVC  420
ASVGSAEGNI PDTPSAAESE QNSELSKTFK FKQLEQANGK QSFSTSARSR TKVQMQGVPV  480
GRAVDLTTLE GYDHLIDELE DMFEIKGELR PRNKWEIVFT DDEGDMMLVG DDPWTEFCSM  540
VRRIFICSSQ EMKKLRSGSK HSVPSIELGE TATILSSDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1701535513356Auxin response factor 1
4ldw_A1e-1701535513356Auxin response factor 1
4ldw_B1e-1701535513356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695583.10.0PREDICTED: auxin response factor 9
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A061GDF80.0A0A061GDF8_THECC; Auxin response factor
STRINGPOPTR_0001s10900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]