PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0529s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 174aa MW: 19934.1 Da PI: 10.3555

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0529s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.4	2.1e-26	54	102	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++i+ledl +yF+lpik+A+k L+v+lTvLK++CR++GI+RWPhRkik Kalax.0529s0023.1.p 54 SRIRLEDLVQYFDLPIKEASKRLKVGLTVLKKKCREFGIPRWPHRKIKC 102 689********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.985	38	123	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-22	56	101	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSEVHQLRRP GHGLDLDLNL PPYSEASLSD SQSSRNDSSD SACESKRSES KVASRIRLED 60 LVQYFDLPIK EASKRLKVGL TVLKKKCREF GIPRWPHRKI KCLDGLIHTL EVEVERQLQD 120 NKVVAMAVAS KKQMLESEKG ALKRKPFMEL QSETKRLRQD VYKRRFLARA CKI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020532738.1	8e-59	protein RKD5
Swissprot	O81791	2e-42	RKD5_ARATH; Protein RKD5
TrEMBL	A0A067LHU7	2e-57	A0A067LHU7_JATCU; Uncharacterized protein
STRING	cassava4.1_024901m	4e-57	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-44	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0529s0023.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]