PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0529s0027.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 280aa MW: 31730.5 Da PI: 6.3491

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0529s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	5.7e-21	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F k n +ps++++++++++l +++e++V++WFqNrRa+ k+ Kalax.0529s0027.1.p 97 RQRWAPTPAQLQILENIFDKgNGTPSKQKIKDITSELskhgQVSETNVYNWFQNRRARAKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	100.1	1.6e-32	96	159	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+++++NV++WFQNr+aR ++kq Kalax.0529s0027.1.p 96 ARQRWAPTPAQLQILENIFDKGNGTPSKQKIKDITSELSKHGQVSETNVYNWFQNRRARAKRKQ 159 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-17	91	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.884	93	158	IPR001356	Homeobox domain
SMART	SM00389	3.7E-14	95	162	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-18	96	159	IPR009057	Homeodomain-like
Pfam	PF00046	9.4E-19	97	157	IPR001356	Homeobox domain
CDD	cd00086	1.52E-13	97	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MMEWEKHHHH RRGVDAPVTE ADARLMMQEQ RQQQLVVMTD DQIEILRKQI AVYTILCDKL 60 VEMHRSLSSQ RDLSGVGIGN TYCDPLMISS SHKISARQRW APTPAQLQIL ENIFDKGNGT 120 PSKQKIKDIT SELSKHGQVS ETNVYNWFQN RRARAKRKQT VPATSNSETD GNQELDSSKE 180 KETKGEIFQS RPIPCSLNDD SCCRSSVMSS DLHSFDPLSS KAEAMFSSED ELKPPTTLGD 240 MSFYDSILSN RRIDQMSGRL ETEGGYHPYH QTDDYSMLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARAKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	1e-103	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	3e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A291R978	1e-101	A0A291R978_9ERIC; Putative WOX13-like homeobox transcription factor
STRING	XP_008241933.1	1e-100	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-64	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Kalax.0529s0027.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]