PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0530s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 285aa    MW: 31567.4 Da    PI: 6.8854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0530s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023105127123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Kalax.0530s0026.1.p 105 FSCNYCQRKFYSSQALGGHQNAH 127
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-6102132No hitNo description
PROSITE profilePS5015711.427105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MYSLMEEPRA EPSPSETSSI ISTTDGITPP QVLLQKTPYP GQIVCVEDYD NEDHRERKSA  60
IQLDLYNSGN TSNQELNLID NLDMESMHTS SMTPQPPDGA EPRVFSCNYC QRKFYSSQAL  120
GGHQNAHKRE RTIAKRGQRL GASMMAAATA FGHAYLQPHH HLPSMSALPI HGAYNRSLGI  180
QVHSMIQKPA YSQNTMMSGH PYGHRNWTRQ PIEQQPAVGK LSMEIINQTS GVTGSTSKFH  240
TPKFETVNTD LPTDHIIGGC WWPGGAISKP DQEDLQKLDL SLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282938.17e-89PREDICTED: zinc finger protein 3-like
TrEMBLF6H3J52e-87F6H3J5_VITVI; Uncharacterized protein
STRINGVIT_04s0008g05930.t013e-88(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-51C2H2 family protein