PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0534s0004.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BES1

Protein Properties

Length: 652aa MW: 73604.1 Da PI: 6.5789

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0534s0004.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	132.3	5.5e-41	52	153	6	105
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 k++++E+E++k+RER+RRa++++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGttyr++ p+ ++ea + sp s Kalax.0534s0004.2.p 52 KKREREKERTKLRERHRRAVTSRMLAGLRQYGNFPLPARADMNDVLAALARQAGWTVEADGTTYRHSALPNpvVQMEAYPVWSIDSPVSA 141 6789***************************************************************99996666666666666666666 PP DUF822 94 lqsslkssalas 105 +++ s++l Kalax.0534s0004.2.p 142 TSLGKASCSLDG 153 665555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.2E-40	52	153	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.66E-146	215	648	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.2E-158	218	649	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.5E-76	242	612	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	255	269	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	276	294	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	298	319	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	391	413	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	464	483	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	498	514	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	515	526	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	533	556	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.6E-49	571	593	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MKTGNEIGAI QHLDPTHHHH QQQQPPSRRP RGFAASAAIH APGSTSACVK GKKREREKER 60 TKLRERHRRA VTSRMLAGLR QYGNFPLPAR ADMNDVLAAL ARQAGWTVEA DGTTYRHSAL 120 PNPVVQMEAY PVWSIDSPVS ATSLGKASCS LDGLHSLQVT LRGHEGTNLS PVASFDSAVI 180 SERDTGRSID TYTSNSLEAD QLLHSTRFGE DQSDFAGTPY IPVYIALAPD IINNLGQLID 240 PDGIRQELSH IKSLNADGVV VLCWWGIVEN WIPQKYEWMG YKLLFNIIRE FKLKLQVVMA 300 FHDYGIDDSG NVLIPLPQWV LDIGRENPDI FFTDRKGERN MECLTLGIDK ERALNKRTGI 360 EVYYDFMRNF RTEFDDLFSE GIVYAVEIGL GASGELKYPA FSERSGWRYP GIGEFQCYDK 420 YLQQSLKLAA KLRGHPFWAK APDNCGHYNS KPFETGFFHE RGDYDSYYGR FFLQWYTQCL 480 IDHADNILSL ASLIFEGTHL VIKIPAIFWW YKTVSHAAEL AAGYYNPTNK DGYSPLFEVL 540 NKHGVTVKFA HSGLLLTSQE SDEALADPES LSWQVLNSAW ERGLTVAGEN PIGLYDKEGY 600 MRVVETAKPR NDPDRHRLSF FVHQYASPLF QTAICVSELD YFIKCMHGEK L*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MKTGNEIGAI QHLDPTHHHH QQQQPPSRRP RGFAASAAIH APGSTSACVK GKKREREKER  60
TKLRERHRRA VTSRMLAGLR QYGNFPLPAR ADMNDVLAAL ARQAGWTVEA DGTTYRHSAL  120
PNPVVQMEAY PVWSIDSPVS ATSLGKASCS LDGLHSLQVT LRGHEGTNLS PVASFDSAVI  180
SERDTGRSID TYTSNSLEAD QLLHSTRFGE DQSDFAGTPY IPVYIALAPD IINNLGQLID  240
PDGIRQELSH IKSLNADGVV VLCWWGIVEN WIPQKYEWMG YKLLFNIIRE FKLKLQVVMA  300
FHDYGIDDSG NVLIPLPQWV LDIGRENPDI FFTDRKGERN MECLTLGIDK ERALNKRTGI  360
EVYYDFMRNF RTEFDDLFSE GIVYAVEIGL GASGELKYPA FSERSGWRYP GIGEFQCYDK  420
YLQQSLKLAA KLRGHPFWAK APDNCGHYNS KPFETGFFHE RGDYDSYYGR FFLQWYTQCL  480
IDHADNILSL ASLIFEGTHL VIKIPAIFWW YKTVSHAAEL AAGYYNPTNK DGYSPLFEVL  540
NKHGVTVKFA HSGLLLTSQE SDEALADPES LSWQVLNSAW ERGLTVAGEN PIGLYDKEGY  600
MRVVETAKPR NDPDRHRLSF FVHQYASPLF QTAICVSELD YFIKCMHGEK L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-119	220	621	11	414	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270680.1	0.0	PREDICTED: beta-amylase 8 isoform X1
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A067JVR7	0.0	A0A067JVR7_JATCU; Beta-amylase
STRING	EOY25398	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Kalax.0534s0004.2.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]