PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0535s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 182aa    MW: 20473.8 Da    PI: 4.4539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0535s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-192371355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr ++ +grWv+eIr+p   gk++r++lg+f tae+Aa a++ a+++l+g
  Kalax.0535s0005.1.p 23 YRGVRKRR-WGRWVSEIREP---GKKTRIWLGSFETAEMAAMAYDVAALYLRG 71
                         9****887.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.922279IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-232280IPR016177DNA-binding domain
SMARTSM003801.1E-382285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-322280IPR001471AP2/ERF domain
PfamPF008472.9E-132371IPR001471AP2/ERF domain
CDDcd000183.33E-312381No hitNo description
PRINTSPR003672.1E-102334IPR001471AP2/ERF domain
PRINTSPR003672.1E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADDEDTIQY GRSSRMSSSM TMYRGVRKRR WGRWVSEIRE PGKKTRIWLG SFETAEMAAM  60
AYDVAALYLR GQDARLNFPE LAGTLPCPRS SSAEDIRAAA QEAYTFWSQK EERDQRAGEC  120
SSSGLARVGL SESQIRAINE SPLDSPKMWM QMGGGGAMFF DNNDAMMTDE MENDDDFSLW  180
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172379663ATERF1
3gcc_A2e-172379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000047.16e-60PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9LQ281e-44ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A0D2SET99e-56A0A0D2SET9_GOSRA; Uncharacterized protein
STRINGGorai.005G116500.11e-56(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.12e-32ERF family protein