PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0539s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 467aa    MW: 49221.1 Da    PI: 8.6204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0539s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-124569327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C++++rtG+C yG+rC+F+H+p
  Kalax.0539s0004.1.p 45 EANCKYYLRTGFCGYGARCRFNHPP 69
                         689********************97 PP
2zf-CCCH38.42e-1291115327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++ tGtCk+G++Ck++H++
  Kalax.0539s0004.1.p  91 QPVCKYYMMTGTCKFGSSCKYHHPR 115
                          689********************96 PP
3zf-CCCH36.67.7e-12134159227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++ +tG+CkyG +CkF+H++
  Kalax.0539s0004.1.p 134 GEKECSYYVKTGQCKYGVTCKFHHPQ 159
                          7899********************97 PP
4zf-CCCH406.4e-13300326127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG CkyG++C+++H+p
  Kalax.0539s0004.1.p 300 PGQPECQYYMKTGDCKYGSSCRYHHPP 326
                          5789*********************97 PP
5zf-CCCH32.21.8e-10347369426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           +C ffa++G CkyG+ Ck+ H+
  Kalax.0539s0004.1.p 347 QPCIFFAQYGVCKYGSACKYDHS 369
                          69********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0754270IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-64269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-64471IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-104569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-64868IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-788115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.12688116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-689116IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-1091115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-593115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389132160IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389299327IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7299326IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6305327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483343371IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6344370IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8347369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEGYGQSNPG AGGSQSDPGG EGYAEESTWQ VGLGGQELYP ERPNEANCKY YLRTGFCGYG  60
ARCRFNHPPD RTMVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK YHHPRHGGGP  120
HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP ALGISPGPAP  180
RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYMQG PYAPMLVPHG MVPVPGWGHF  240
PAHVSPASPT PQPAVGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS QKDRGLPERP  300
GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAQPCI FFAQYGVCKY  360
GSACKYDHSS RTASLSYSPS ASSLTDIPVA PLPVGSSTGT LAASSSSSDL HQEIAAVSRK  420
DSSPTPPISS SATPPTSASL SSTPPKSQPA PHSTGSTSSK EAHSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.11e-170zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-132C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2P6QY681e-167A0A2P6QY68_ROSCH; Putative transcription factor C3H family
STRINGXP_010241841.11e-165(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-123C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]