PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0541s0041.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 314aa    MW: 34790.6 Da    PI: 7.2207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0541s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12141188355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h ++Er+RR+++ + f  L  l+P +     kK++Ka++L ++v+++k+Lq
  Kalax.0541s0041.1.p 141 QNHIMAERKRRENLTQLFIALSALVPGL-----KKMDKASVLAETVKHLKQLQ 188
                          68**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15141200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-12141192No hitNo description
SuperFamilySSF474597.33E-16141201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDPSLINQW MMMSSYEDLS AVLPPAMSSA AAASSDDDHL QHSLLYRRQL TAVDDFDHFN  60
NRPAKQLKAS SWGSSCEPMP SPETQNKFSE DYFSTVNPPQ FTINRLDYPV WDNENTYVLK  120
PSHLRASSGT NSAATRSSGA QNHIMAERKR RENLTQLFIA LSALVPGLKK MDKASVLAET  180
VKHLKQLQDR IKTLEDQIKS NKATDSRIRN PSAFSGEMFV TGAPNWQLPE IDARVCGRSV  240
LIRIIHCDKN KEGVIEKTLS EIAKLGLAVV SSNVLAFGSS ALHITIVAKM DAECCKTAEE  300
LVRTLRAAFM DFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-41bHLH family protein