PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0544s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HSF

Protein Properties

Length: 501aa MW: 54421.1 Da PI: 5.3507

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0544s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115	4.7e-36	28	119	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++ ++sws+ +nsfvv++ ef+k++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkk Kalax.0544s0001.1.p 28 FLSKTYDMVDDASTDGVVSWSSGNNSFVVWNVAEFSKELLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKK 108 9**************************************************************999.........********* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i+r+k Kalax.0544s0001.1.p 109 HLLKTINRRKA 119 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.8E-59	24	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.1E-38	25	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.26E-34	25	117	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.9E-19	28	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.1E-31	28	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.9E-19	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MEGAAAEGGV GGGGPGGGSI GGGLPPPFLS KTYDMVDDAS TDGVVSWSSG NNSFVVWNVA 60 EFSKELLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGKKHL LKTINRRKAP 120 HMNSPAPQIQ TAAVGACIEV GKFGLEEEVE RLKRDKNLLM QELVRLKQQQ QSTDHQLQTV 180 GSRVQMMEQR QQQMMSFLAK AMQSPGFMSQ LVQQQNESSR RITNSSKKRR LPNQDEPVFR 240 TYGDRTPDGQ VTKFQPLLNE AAASMLRQIL NMNVSAQRET SLWKPDAFLI DDVSSSLNAF 300 DSGSSSSRLS GVTLAEVTPS SALSPQLEPS FPAKGVCGGV TEVQSPPHLL AAQLQPSKYP 360 ATELLNTGDT SVLPDLSDHL GFPKNIVGLP GASIADTGAK MGSVHPMMLA RDGSPTKSNT 420 ELSDDDGAKL PGIDDVFWEQ FLSTSPLTGE TDEMSSVLDD GIAQELDITS GQEALWNRGQ 480 HMDQLTEQMG LLTSNAAIRR *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MEGAAAEGGV GGGGPGGGSI GGGLPPPFLS KTYDMVDDAS TDGVVSWSSG NNSFVVWNVA  60
EFSKELLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGKKHL LKTINRRKAP  120
HMNSPAPQIQ TAAVGACIEV GKFGLEEEVE RLKRDKNLLM QELVRLKQQQ QSTDHQLQTV  180
GSRVQMMEQR QQQMMSFLAK AMQSPGFMSQ LVQQQNESSR RITNSSKKRR LPNQDEPVFR  240
TYGDRTPDGQ VTKFQPLLNE AAASMLRQIL NMNVSAQRET SLWKPDAFLI DDVSSSLNAF  300
DSGSSSSRLS GVTLAEVTPS SALSPQLEPS FPAKGVCGGV TEVQSPPHLL AAQLQPSKYP  360
ATELLNTGDT SVLPDLSDHL GFPKNIVGLP GASIADTGAK MGSVHPMMLA RDGSPTKSNT  420
ELSDDDGAKL PGIDDVFWEQ FLSTSPLTGE TDEMSSVLDD GIAQELDITS GQEALWNRGQ  480
HMDQLTEQMG LLTSNAAIRR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-25	3	117	1	129	Heat shock factor protein 1
5d5v_B	5e-25	3	117	1	129	Heat shock factor protein 1
5d5v_D	5e-25	3	117	1	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273949.1	1e-180	PREDICTED: heat stress transcription factor A-1b
Swissprot	Q84T61	1e-157	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	F6HEE6	1e-179	F6HEE6_VITVI; Uncharacterized protein
STRING	VIT_16s0039g01840.t01	1e-180	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	1e-122	heat shock transcription factor A1E

Link Out ? help Back to Top
Phytozome	Kalax.0544s0001.1.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]