PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0545s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 266aa    MW: 27646 Da    PI: 7.4066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0545s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042154176123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k F++   L  H r+H
  Kalax.0545s0007.1.p 154 HECAICHKQFPTGQALGGHKRRH 176
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.39104126IPR007087Zinc finger, C2H2
SMARTSM003550.02104126IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.73E-8104176No hitNo description
PfamPF139123.7E-13104128IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
PfamPF139121.5E-12153178IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974154176IPR007087Zinc finger, C2H2
SMARTSM003550.3154176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAMEAVSRPP GYALDGFAKG KRSKRPRSEG GGEELGLVSS LLALDEADVD LARSLMMLAS  60
GVVDEERVGD VKVGGGGGGG CLEVKDSVSM AAAETESTVK TASYRCTVCD KEFGSYQALG  120
GHKASHRKLP ASGESFDTVA AAAGVGGGGG GRVHECAICH KQFPTGQALG GHKRRHYEGV  180
LGKQNHHINH LHSLKNATTS SGVTTATTSD GAGSSLSHRG FDLNIPALPD LWPVSRFAAA  240
EEEVESPHPA RKPRVFLPND VHIRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-31salt tolerance zinc finger