PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0545s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 177aa    MW: 18825.5 Da    PI: 10.1516
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0545s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.19.6e-272103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+ lr++C ++Cvl+p +      ++q +++ +++k+FG+s ++ +l+a+p+++++++++sl++eA+ r+ +Pv+Gavg+++++++
  Kalax.0545s0008.1.p   2 SCNGCRALRKGCGDSCVLRPSLqwiagHQAQVHATLFAAKFFGRSDLIGFLSAVPHDRKPALFQSLLFEACGRTINPVSGAVGLLSAGNW 91 
                          6*********************99887678889********************************************************* PP

               DUF260  86 qleqlkaelall 97 
                          +l+q++++++l 
  Kalax.0545s0008.1.p  92 HLCQAAVDAVLS 103
                          *****9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3881107IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSCNGCRALR KGCGDSCVLR PSLQWIAGHQ AQVHATLFAA KFFGRSDLIG FLSAVPHDRK  60
PALFQSLLFE ACGRTINPVS GAVGLLSAGN WHLCQAAVDA VLSGRTPQPL PESFVSTTPS  120
RTTLNNTSSK TEGIERMRRK RSADAPSFTG SELLFSGNFP NQDSGGRGGK MLNLFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539286.12e-56LOB domain-containing protein 38
RefseqXP_028056214.11e-56LOB domain-containing protein 39-like
SwissprotQ9SN232e-51LBD38_ARATH; LOB domain-containing protein 38
TrEMBLI1LH744e-55I1LH74_SOYBN; Uncharacterized protein
STRINGGLYMA11G05280.16e-56(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-53LOB domain-containing protein 38