PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0546s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 571aa MW: 63487.8 Da PI: 6.6206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0546s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	459	479	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cgk F ++ ++++H+++ H Kalax.0546s0002.1.p 459 CEKCGKAF-QQAEMEKHMKVfH 479 ******.********988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03152	7.8E-43	90	260	IPR004854	Ubiquitin fusion degradation protein UFD1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MDFELRRARE KLEKEQNDRK EKARLKLERE RKAKLEAFRQ QEAIEAARRT RRIDAAEAQL 60 KADEQMQESL IAGKGIVFHR FLTPVLYEGS GDKIKLPLSC FKELSDQGAF DKGPLYFRLS 120 VVQQNSPSDP NPNGEDTQRS THSGVLEFTA DEDCVALPRH VWNNLFPTAE IAAPLVEVRY 180 VWLPKGVYAK LQPDRIGFSD IPNHKAVLET ILRHHATLSE NDLLTVNHGI LTYTLRVLEL 240 KPSSSVSVLE TDIEVDVVSP DKTSNSADQP YLQPLELGKS ESGALDEGNY VYYKFSINGD 300 VWSIIESGDA NVCVKMETGE NDGDTDLYVS RHPLLFPTTH QHQWSSHDVG SKTLTMTAKD 360 ENLGAGSYTV GVYGFKGTSK YKLTVTVEAA ASQKVGLKAT STSQAVEADT VECRNCKHLI 420 PSRSITLHEA YCSRNNVTCK RPGCGVVLRV GEAKNHVHCE KCGKAFQQAE MEKHMKVFHE 480 PLQCPCGVLL EKEDMVQHQT SDCPLRLITC RFCGDMVQAG NSAIDVRDRM RGLSEHESGC 540 GSRTAPCSTC GRSVMLKDMD IHQVAVHPNN *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MDFELRRARE KLEKEQNDRK EKARLKLERE RKAKLEAFRQ QEAIEAARRT RRIDAAEAQL  60
KADEQMQESL IAGKGIVFHR FLTPVLYEGS GDKIKLPLSC FKELSDQGAF DKGPLYFRLS  120
VVQQNSPSDP NPNGEDTQRS THSGVLEFTA DEDCVALPRH VWNNLFPTAE IAAPLVEVRY  180
VWLPKGVYAK LQPDRIGFSD IPNHKAVLET ILRHHATLSE NDLLTVNHGI LTYTLRVLEL  240
KPSSSVSVLE TDIEVDVVSP DKTSNSADQP YLQPLELGKS ESGALDEGNY VYYKFSINGD  300
VWSIIESGDA NVCVKMETGE NDGDTDLYVS RHPLLFPTTH QHQWSSHDVG SKTLTMTAKD  360
ENLGAGSYTV GVYGFKGTSK YKLTVTVEAA ASQKVGLKAT STSQAVEADT VECRNCKHLI  420
PSRSITLHEA YCSRNNVTCK RPGCGVVLRV GEAKNHVHCE KCGKAFQQAE MEKHMKVFHE  480
PLQCPCGVLL EKEDMVQHQT SDCPLRLITC RFCGDMVQAG NSAIDVRDRM RGLSEHESGC  540
GSRTAPCSTC GRSVMLKDMD IHQVAVHPNN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2yuj_A	4e-22	91	256	40	187	Ubiquitin fusion degradation 1-like
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273297.1	0.0	PREDICTED: uncharacterized protein LOC100246609
TrEMBL	F6HID7	0.0	F6HID7_VITVI; Uncharacterized protein
STRING	VIT_12s0059g01100.t01	0.0	(Vitis vinifera)

Link Out ? help Back to Top
Phytozome	Kalax.0546s0002.1.p