PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0547s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 172aa MW: 18669.9 Da PI: 10.7546

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0547s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	278.8	2.6e-85	19	171	147	301
GAGA_bind 147 kkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236 + +kkr + pk +k kk+kk ++ +k++ + +s +r+k +kk++d+v+ngv++D+s++P+PvC+CtGa++qCY+WG+GGWqSaCCt Kalax.0547s0016.1.p 19 EGPTKKRPGGGAPKIPKIKKPKKGPSLPKENGNGSS--QRVKPPKKNVDVVINGVDMDISNIPIPVCTCTGASQQCYRWGCGGWQSACCT 106 334555778899*********9999988887777..89********************************************** PP GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 t+iSvyPLP+stkrrgaRiagrKmS gafkk+LekLa+eGy++ +p+DLk+hWAkHGtnkfvtir Kalax.0547s0016.1.p 107 TSISVYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLASEGYNFTHPIDLKSHWAKHGTNKFVTIR 171 **************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.4E-83	1	171	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.5E-86	4	171	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MPKTEMVVRM EDPVPLKVEG PTKKRPGGGA PKIPKIKKPK KGPSLPKENG NGSSQRVKPP 60 KKNVDVVING VDMDISNIPI PVCTCTGASQ QCYRWGCGGW QSACCTTSIS VYPLPMSTKR 120 RGARIAGRKM SLGAFKKVLE KLASEGYNFT HPIDLKSHWA KHGTNKFVTI R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268137.1	1e-92	GAGA-binding transcriptional activator BBR/BPC1-like
Refseq	XP_010649609.1	1e-92	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_010650043.1	1e-92	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_010650443.1	1e-92	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_019076461.1	2e-92	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
Refseq	XP_019076625.1	2e-92	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
Swissprot	P0DH88	1e-72	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	1e-72	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A438DGL6	4e-90	A0A438DGL6_VITVI; Protein basic pentacysteine 1
TrEMBL	B2Z454	3e-91	B2Z454_VITVI; GAGA-binding transcriptional activator BBR/BPC1-like
TrEMBL	F6HFA4	1e-90	F6HFA4_VITVI; Uncharacterized protein
STRING	VIT_01s0011g06380.t01	2e-91	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-72	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Kalax.0547s0016.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]