PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0548s0024.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 416aa MW: 47145.6 Da PI: 6.5125

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0548s0024.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65	1.6e-20	125	187	25	86
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +kk++W+++sk+m+ergf +sp+qC++k+++lnkryk+++++ +++ +++++++ ++d ++ Kalax.0548s0024.2.p 125 MQKKGKWKSISKVMAERGFYVSPQQCEDKFNDLNKRYKRLNDILGRGtSCQVVEKPELLDMMD 187 49*********************************************6699999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-17	126	213	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEGNLNMVPG GGSYGGGIDQ QGSMRYNHHH RPSSHAVPDN DLRQGPALHP SIHDVFPPFT 60 VGTMQDCGDR SLSLADYNKA ERARNVTSDD DEPGVMEDAG NCHNGGQDAS SGYRGGGGRM 120 KFALMQKKGK WKSISKVMAE RGFYVSPQQC EDKFNDLNKR YKRLNDILGR GTSCQVVEKP 180 ELLDMMDHLS EKSKEDVRKI LSSKHLFYEE MCSYHNGNRL HLPHDPALQR ALHLALESRE 240 ISEISDGRRK SVDDYDEDDH GGESDDCDEF EECHVAHGDS RALCGVMEGS SAKRTKQDLS 300 HDEFSFGNAQ EGSKISQLNT QNVHIAMNQA YPEGSKSAWY NSQMMQSRSL KLEEKRTKIQ 360 MEMLELEKQR LKWQRFSKKK DRELEKMRLE NERMKLENES MALELKRREI GLKGD*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEGNLNMVPG GGSYGGGIDQ QGSMRYNHHH RPSSHAVPDN DLRQGPALHP SIHDVFPPFT  60
VGTMQDCGDR SLSLADYNKA ERARNVTSDD DEPGVMEDAG NCHNGGQDAS SGYRGGGGRM  120
KFALMQKKGK WKSISKVMAE RGFYVSPQQC EDKFNDLNKR YKRLNDILGR GTSCQVVEKP  180
ELLDMMDHLS EKSKEDVRKI LSSKHLFYEE MCSYHNGNRL HLPHDPALQR ALHLALESRE  240
ISEISDGRRK SVDDYDEDDH GGESDDCDEF EECHVAHGDS RALCGVMEGS SAKRTKQDLS  300
HDEFSFGNAQ EGSKISQLNT QNVHIAMNQA YPEGSKSAWY NSQMMQSRSL KLEEKRTKIQ  360
MEMLELEKQR LKWQRFSKKK DRELEKMRLE NERMKLENES MALELKRREI GLKGD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473052.1	1e-163	uncharacterized protein LOC102612442
TrEMBL	A0A067GYJ6	1e-161	A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBL	V4V6N5	1e-161	V4V6N5_9ROSI; Uncharacterized protein
STRING	XP_006473052.1	1e-162	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-119	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Kalax.0548s0024.2.p