PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0549s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 276aa    MW: 30076.8 Da    PI: 8.43
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0549s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09158205455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kalax.0549s0001.1.p 158 SHSLAERARRVKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 205
                          8*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.15E-7152205No hitNo description
SuperFamilySSF474591.06E-15152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15154221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-6160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MELPLVNESS FTPASLASYS LEDFWPLGAG IGDHARVLGL RTANSERAGL GNRDGSAEES  60
TVTDQSFSRN GGGGRKRRLA DESSKVGEAS GGAGQLKTSS TKRVNILELK EEQKSMKDEV  120
DGTYVTGAKH AEQSTKVSEP SKLDYIHVRA RRGQATDSHS LAERARRVKI SERMKILQDL  180
VPGCSKVIGK ALVLDEIINY VQSLQYQVEF LSMKLEAVNS SIVPKDKMLP AKDLEVSGFD  240
FAGMTFGTQP NSKYAQGPQS EWLHMHLGRN FERAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882712.16e-99transcription factor bHLH79 isoform X1
SwissprotQ69WS35e-64BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2I4FIZ42e-96A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGcassava4.1_013487m7e-96(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.15e-65bHLH family protein