PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0549s0001.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 275aa    MW: 29948.6 Da    PI: 7.7563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0549s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.3e-09157204455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kalax.0549s0001.2.p 157 SHSLAERARRVKISERMKILQDLVPGC----SKVIGKALVLDEIINYVQSLQ 204
                          8*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-15151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-7151204No hitNo description
PROSITE profilePS5088814.799153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15153220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-6159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MELPLVNESS FTPASLASYS LEDFWPLGAG IGDHARVLGL RTANSERAGL GNRDGSAEES  60
TVTDQSFSRN GGGGRKRRLA DESSKVGEAS GGAGQLTSST KRVNILELKE EQKSMKDEVD  120
GTYVTGAKHA EQSTKVSEPS KLDYIHVRAR RGQATDSHSL AERARRVKIS ERMKILQDLV  180
PGCSKVIGKA LVLDEIINYV QSLQYQVEFL SMKLEAVNSS IVPKDKMLPA KDLEVSGFDF  240
AGMTFGTQPN SKYAQGPQSE WLHMHLGRNF ERAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882713.13e-98transcription factor bHLH79 isoform X2
RefseqXP_018831619.12e-98PREDICTED: transcription factor bHLH79-like isoform X1
SwissprotQ69WS36e-64BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2I4FIZ45e-97A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGcassava4.1_013487m2e-94(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.13e-63bHLH family protein