PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0549s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 495aa    MW: 54112.5 Da    PI: 5.1023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0549s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.91.6e-13167190326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           e C+f++rtG CkyG +CkF+H+
  Kalax.0549s0034.1.p 167 AEDCNFYMRTGSCKYGLSCKFNHP 190
                          689********************9 PP
2zf-CCCH25.62.2e-08214237427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           +C++++  G CkyG  C+F H++
  Kalax.0549s0034.1.p 214 TECKYYLSAGGCKYGKACRFKHSR 237
                          58********************95 PP
3zf-CCCH33.57.3e-11258282226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++r+G Cky ++C+F+H+
  Kalax.0549s0034.1.p 258 GEKECPYYMRNGSCKYAASCRFNHP 282
                          7899********************8 PP
4zf-CCCH33.38e-11381407127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C ff+rtG Cky ++CkF+H++
  Kalax.0549s0034.1.p 381 PGQPECTFFLRTGDCKYRSTCKFHHPK 407
                          5789*********************96 PP
5zf-CCCH24.83.8e-08427452227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C +++ +G+Ck+G++C++ H+p
  Kalax.0549s0034.1.p 427 GQSICTHYRHYGICKFGPKCRYDHPP 452
                          7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-7164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596164192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6165193IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11167190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5170189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464210238IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012210237IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6214237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5214239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5216238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624256284IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-5256283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5258283IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4262281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051380408IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4380407IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6382407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5384408IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4386407IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4425452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112425453IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5427452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5428452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
METPEPIPSP DSDQHQPPIH DSQPPLPDPS DDDPKSPPPA PPTEELQAMI LKEDEAPGDG  60
DGDGGRVDGV SERKDEADGG VGGGGSENEG VAESETGRQG EKEKVEEVVK DGWSDDQHGR  120
VDGGVEEAGD GYPVDGWSIG NGEGEPDWKE EAQGRDMQVQ YPLRPGAEDC NFYMRTGSCK  180
YGLSCKFNHP LRRTNQTVKP RVKEREDSSE RPMTECKYYL SAGGCKYGKA CRFKHSRETP  240
SVVPVLEYNF LGLPIRPGEK ECPYYMRNGS CKYAASCRFN HPNPTAGSDT PSGYANDEHA  300
SSWSPSRPSN EVASFVPGSY TSAQGVHPHI SEWNGYQGPV FTAEKSFRPP PAFGLNIPPM  360
AGSGYSHFPS QLASEEFPER PGQPECTFFL RTGDCKYRST CKFHHPKDRN VQPLCAMTDK  420
GLPLRPGQSI CTHYRHYGIC KFGPKCRYDH PPNIQQSEPS AMTGLGQPHH PFSNFASPED  480
ASRLSSMGEG TITL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028781830.11e-134zinc finger CCCH domain-containing protein 67-like isoform X3
SwissprotQ5RJC51e-110C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A061FXU41e-129A0A061FXU4_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRINGEOY223601e-130(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-112C3H family protein