PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0550s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 442aa    MW: 46922.5 Da    PI: 7.4285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0550s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.5e-134772227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ Cr+++rtG+C yG+rC+F+H+p
  Kalax.0550s0007.1.p 47 DEADCRYYLRTGFCGYGARCRFNHPP 72
                         6799********************97 PP
2zf-CCCH37.34.7e-1297121327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+ tGtC++G++Ck++H++
  Kalax.0550s0007.1.p  97 QPVCKYFMMTGTCRFGSSCKYHHPR 121
                          689********************96 PP
3zf-CCCH35.41.8e-11140165227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++ +tG+Ck+G +CkF+H++
  Kalax.0550s0007.1.p 140 GEKECSYYVKTGQCKFGVTCKFHHPQ 165
                          7899********************97 PP
4zf-CCCH40.16e-13305331127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG CkyG++C+++H+p
  Kalax.0550s0007.1.p 305 PGQPECQYYMKTGDCKYGSSCRYHHPP 331
                          5789*********************97 PP
5zf-CCCH27.45.7e-09351374326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++C +fa++G CkyG  Ck+ H+
  Kalax.0550s0007.1.p 351 APPCIYFAQYGVCKYGYACKYDHS 374
                          689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-64572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4034573IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-104772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-64874IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-65171IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-794121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.33394122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-695122IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-997121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-699121IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389138166IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7304331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389304332IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6309332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6310332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5346374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46348376IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4348375IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6351374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEGYVHGQNP GAGGSRSQSD QGGEGYAEES TWRLGFGGQE SYPERPDEAD CRYYLRTGFC  60
GYGARCRFNH PPDRTTVVGV LGLGGGEYSE YPQRVGQPVC KYFMMTGTCR FGSSCKYHHP  120
RQGGGTLVSL NYLGYPLRPG EKECSYYVKT GQCKFGVTCK FHHPQPSNIP VTMATPGQGI  180
PPGPAPGLYP QVQPASISAA QPYGVMPGTW QVARPPTMLP GPYIQGPYAS MLVPHGMVPV  240
PEWGTFPAHV SPALPSQPTA ASSPLHGITQ LSSLAPEYTG PYSSVSPSVS ASSSSQKESG  300
LPERPGQPEC QYYMKTGDCK YGSSCRYHHP PELIRPETIS EPANLPIRPG APPCIYFAQY  360
GVCKYGYACK YDHSSRTLCY SPSASSLADM PEAPVAVGSS TGTVAASSSS SDLHQEIAAL  420
SIKDSSSNPT PTPTPISSSA S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.11e-161zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-126C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A314KY391e-155A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009631342.11e-154(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-114C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]