PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0550s0007.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 339aa    MW: 35628.2 Da    PI: 8.0109
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0550s0007.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-081181027
                         GGTS--TTTTT-SS-SSS CS
              zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                         + tGtC++G++Ck++H++
  Kalax.0550s0007.2.p  1 MMTGTCRFGSSCKYHHPR 18
                         78**************96 PP
2zf-CCCH35.91.3e-113762227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         ++++C+++ +tG+Ck+G +CkF+H++
  Kalax.0550s0007.2.p 37 GEKECSYYVKTGQCKFGVTCKFHHPQ 62
                         7899********************97 PP
3zf-CCCH40.64.3e-13202228127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG CkyG++C+++H+p
  Kalax.0550s0007.2.p 202 PGQPECQYYMKTGDCKYGSSCRYHHPP 228
                          5789*********************97 PP
4zf-CCCH27.94.1e-09248271326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++C +fa++G CkyG  Ck+ H+
  Kalax.0550s0007.2.p 248 APPCIYFAQYGVCKYGYACKYDHS 271
                          689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.601119IPR000571Zinc finger, CCCH-type
SMARTSM0035633118IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3893563IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-53562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63663IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-93762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-44161IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389201229IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10203228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6206229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6207229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5243271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46245273IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4245272IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-7248271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMTGTCRFGS SCKYHHPRQG GGTLVSLNYL GYPLRPGEKE CSYYVKTGQC KFGVTCKFHH  60
PQPSNIPVTM ATPGQGIPPG PAPGLYPQVQ PASISAAQPY GVMPGTWQVA RPPTMLPGPY  120
IQGPYASMLV PHGMVPVPEW GTFPAHVSPA LPSQPTAASS PLHGITQLSS LAPEYTGPYS  180
SVSPSVSASS SSQKESGLPE RPGQPECQYY MKTGDCKYGS SCRYHHPPEL IRPETISEPA  240
NLPIRPGAPP CIYFAQYGVC KYGYACKYDH SSRTLCYSPS ASSLADMPEA PVAVGSSTGT  300
VAASSSSSDL HQEIAALSIK DSSSNPTPTP TPISSSAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.11e-118zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-100C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A314KY391e-117A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGcassava4.1_006608m1e-116(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-85C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]