PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0550s0025.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 676aa    MW: 73502.8 Da    PI: 6.831
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0550s0025.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.1e-29218271155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Kalax.0550s0025.2.p 218 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 271
                          79*******************.********************************8 PP
2Response_reg73.21e-24381461109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ + +l+++l++  y ev+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll     e  +lp+i+++a ++++ + +
  Kalax.0550s0025.2.p  38 VLVVDDDPTCLAILERMLKSCLY-EVTKCNRAEVALSLLRENKngYDVVISDVHMPDMDGFKLLVYVDLEM-DLPVIMMSADDTKAVVMK 125
                          89*********************.***************999999*********************97755.9***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +++l +
  Kalax.0550s0025.2.p 126 GVTHGACDYLIKPVRMDALKN 146
                          ****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1689664IPR017053Response regulator B-type, plant
SuperFamilySSF521723.42E-3435160IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-4135180No hitNo description
SMARTSM004487.5E-2936148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.43137152IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2238146IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.72E-2639151No hitNo description
PROSITE profilePS5129410.581215274IPR017930Myb domain
SuperFamilySSF466895.55E-20216275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30217276IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-25218271IPR006447Myb domain, plants
PfamPF002496.2E-8220270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNLSSGGNRS MSAVASSCGG NWRPVDAASD RFPAGLRVLV VDDDPTCLAI LERMLKSCLY  60
EVTKCNRAEV ALSLLRENKN GYDVVISDVH MPDMDGFKLL VYVDLEMDLP VIMMSADDTK  120
AVVMKGVTHG ACDYLIKPVR MDALKNIWQH VVRKKKHEWK DLEQSRSGEE VENRLAKQTE  180
EADYSSSANE GGSWRNSKRR KEEEEDVDDR DDTSSLKKPR VVWSVELHQQ FVSAVNQLGI  240
DKAVPKKILE LMNVPGLTRE NVASHLQKYR LYLRRISGGV PQHPGVLNNG FMGSQEGPFG  300
AMSSLTGLDL QAIAASGHLP AQSLAGIQSA VFNKGNTLPG MTMAGIDQRN IFSFEIPKTR  360
FGEVQQLQQM ANGKQINLLH GIPTNMESKQ LTSLHHSESS IGSVNMQPSP HSNSSGSLMM  420
QAPQPQSRAQ LLNEAAGAQS SKIPSSIGPL SVSNGVGVVR MRNNNPAHDN RRTGFSLVSK  480
PALVTSFPMD NSELPGNSFP LASAPGVTAA KGTLHDEINS RIKGPVGYGL NYDMFNETHQ  540
LRSHPWELRA LGVQFEGSHR QNNLQGNFDI SPSVKVQQQN YSVGTTLNAG SAPAVYSSGE  600
RMQQPYGAQN TSQQITSHSS VKIKGESMSD FESLPQPYGQ EDLMSALLKQ HPGSNGAADD  660
EFDFGGCPPI GNIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22214277164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084014.10.0two-component response regulator ARR2
SwissprotQ9ZWJ91e-178ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A067JVF90.0A0A067JVF9_JATCU; Two-component response regulator
STRINGEOY066390.0(Theobroma cacao)
STRINGXP_002519174.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-170response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]