PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0550s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 159aa    MW: 16638.7 Da    PI: 9.6713
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0550s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-184377135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         Cs Cgt+kTplWR gp g+k+LCnaCG++ rk+++
  Kalax.0550s0026.1.p 43 CSDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 77
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SMARTSM004016.8E-133789IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-133876No hitNo description
Gene3DG3DSA:3.30.50.103.6E-154176IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-134292No hitNo description
PROSITE profilePS5011412.1634373IPR000679Zinc finger, GATA-type
PfamPF003202.0E-164377IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MFDQKGSEIE EVKSNNSSTI TAALACDASS SSGSEGQPIK KTCSDCGTSK TPLWRGGPAG  60
PKSLCNACGI RSRKRRRALL GLTKPEEKRS KKTTGSTASN GGVTGVSGCS GEETLTSHQK  120
LTGLTWQRST AEKYRRVLGE EEQAAVLLMA MAYGSVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021291147.16e-45GATA transcription factor 15-like
SwissprotQ9FJ103e-34GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A1R3G6953e-41A0A1R3G695_COCAP; Zinc finger, GATA-type
TrEMBLA0A1R3GJY53e-41A0A1R3GJY5_9ROSI; Zinc finger, GATA-type
STRINGLus100168494e-42(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-36GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]