PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0555s0007.5.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 354aa MW: 39572.6 Da PI: 6.6104

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0555s0007.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.7	4.5e-12	65	97	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k++rr+++NReAAr+sR+RKka++++Le+ Kalax.0555s0007.5.p 65 PADKVQRRLAQNREAARKSRLRKKAYVQQLETS 97 689***************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-8	63	113	No hit	No description
SMART	SM00338	7.6E-9	64	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.875	66	110	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-8	66	97	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.47E-7	68	113	No hit	No description
PROSITE pattern	PS00036	0	71	86	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.1E-31	156	229	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MNGMGMYDPV NHIGTWAENF KGNGFTITSP STILEVNTKL DNQSEDTSNG TFGHATNYDE 60 ETTKPADKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LLQLEQELHQ TRQQGFNAGG 120 GLGASHSGFS GAVNSGITTF QMEYGRWVEK NNKQVIELRN ALNSYQSDAD LETLVDNVMK 180 HYFELFQMKQ TAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKVLVP HLDPLAENQL 240 LDICNLRRSC QQAEDALSQG LDKLQEIVVD TLAAGGQMDE GSSIPQIAAT MDKLGDLVSF 300 VNQADHLRKE TLNQMSHILT THQTARGLLA LGDYLERLRA LSSLWAARQR EAA*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MNGMGMYDPV NHIGTWAENF KGNGFTITSP STILEVNTKL DNQSEDTSNG TFGHATNYDE  60
ETTKPADKVQ RRLAQNREAA RKSRLRKKAY VQQLETSRLR LLQLEQELHQ TRQQGFNAGG  120
GLGASHSGFS GAVNSGITTF QMEYGRWVEK NNKQVIELRN ALNSYQSDAD LETLVDNVMK  180
HYFELFQMKQ TAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKVLVP HLDPLAENQL  240
LDICNLRRSC QQAEDALSQG LDKLQEIVVD TLAAGGQMDE GSSIPQIAAT MDKLGDLVSF  300
VNQADHLRKE TLNQMSHILT THQTARGLLA LGDYLERLRA LSSLWAARQR EAA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048077.1	1e-180	PREDICTED: transcription factor TGA1
Refseq	XP_017983090.1	1e-180	PREDICTED: transcription factor TGA1
Swissprot	Q39162	1e-164	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A061DI74	1e-179	A0A061DI74_THECC; BZIP transcription factor family protein isoform 1
STRING	EOX92234	1e-180	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-151	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Kalax.0555s0007.5.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]