PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0556s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 101aa    MW: 11096.5 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0556s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-0730671854
                         HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         + +++L+ l+P+ +s+ ++ ++s + +L+++++YIksL
  Kalax.0556s0003.1.p 30 DLLSKLQLLIPEaRSRRSGNRVSASKVLQETCNYIKSL 67
                         7899********666777777****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.8291267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-73087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-43067IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-63172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MSSRSRSSRS RQSSSSGEGS TRISEDQVLD LLSKLQLLIP EARSRRSGNR VSASKVLQET  60
CNYIKSLHQE VDDLSDRLAE LLASMDVDNA QAAMIRNLLM *
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344270.12e-35PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-31PRE5_ARATH; Transcription factor PRE5
TrEMBLM0ZSZ34e-34M0ZSZ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000074307e-35(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-27bHLH family protein