PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0558s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 229aa    MW: 26369.2 Da    PI: 9.7287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0558s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.9e-1321105898
                          -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           d l  ++l++p +f+ ++ +g+   +   tl + s   We  +  ++  +++++++GW++F +++ L   + ++F+++g++ f  +v+v
  Kalax.0558s0002.1.p  21 RDDLHAKNLRVPPQFM-KYlSGD--LTDHATLITHSTACWEAAI--SRAEETIYFKGGWENFFEDHSLGHDELLMFTYKGNMHF--HVRV 103
                          45555566********.555666..44579999***********..**********************************9***..5555 PP

                          E- CS
                   B3  97 fr 98 
                          + 
  Kalax.0558s0002.1.p 104 LG 105
                          44 PP
2B3482.3e-151502271898
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          lp + ++++ ++++++ t  ++   gr+W+vk+  ++  g++ ++kGW++Fv++n+Lk gD++ F+  +  + el+v++fr
  Kalax.0558s0002.1.p 150 LPIPTTANMILNPPREATNFVMRCGGRVWDVKC-LQNAAGKHRFSKGWRNFVRDNELKPGDTCAFE--QVATYELRVTIFR 227
                          566666566677778888899999*********.7899999*************************..4478888999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1710107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1813109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-914104No hitNo description
PROSITE profilePS5086310.50314107IPR003340B3 DNA binding domain
SMARTSM010191.2E-916107IPR003340B3 DNA binding domain
PfamPF023626.5E-1019106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-20127227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-20128227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-17133227No hitNo description
SMARTSM010190.0021135228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576135228IPR003340B3 DNA binding domain
PfamPF023626.4E-13150227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MATRSRSVNS GKEKSFIAIM RDDLHAKNLR VPPQFMKYLS GDLTDHATLI THSTACWEAA  60
ISRAEETIYF KGGWENFFED HSLGHDELLM FTYKGNMHFH VRVLGRDRCL RTQNARPQIQ  120
RQLPGESFTS SFPHFKICLR KSSFQPFYLL PIPTTANMIL NPPREATNFV MRCGGRVWDV  180
KCLQNAAGKH RFSKGWRNFV RDNELKPGDT CAFEQVATYE LRVTIFRC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.18e-12B3 family protein