PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0559s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 431aa    MW: 46009.3 Da    PI: 5.929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0559s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11240285555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Kalax.0559s0013.1.p 240 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 285
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16233294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-12233289No hitNo description
PROSITE profilePS5088816.964235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15237294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9240285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQPQPQPQQQ CNGSSASPVD DMQHNLNLNS STAASPLMKF PLLPSSHHDL QTSSHHFDQM  60
RQSFDHAPPA HDDFLEQMLS TLNSASAWDL KAAGESSGSP EESDNGVSAA AFQFDEAVVA  120
SRLRAQQHHQ HMLPLPFGVD NLVDRSRGSL LEGSSFDSYH PGVENQMAGL FNGSFVGSLL  180
GPGQQMNLPE QFQSSQQGGP SFEAPAAMNN QAPISSSGGA AAAPPKQRVR ARRGQATDPH  240
SIAERLRRER IAERMKGLQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAG  300
AVAPLVADNM SSEQGGGDSL TSRAMMRRRS INNGEVTATS TDEVEVSAAV AEKQVAKLME  360
EDMGSAMQYL QSKGLCLMPI SLAAAISTAK NPLTSSSTTK RGTNSPLTTR TDVAQVLELK  420
GSADDFGIQK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874690.11e-101transcription factor bHLH66-like
TrEMBLA0A2N9G1V11e-102A0A2N9G1V1_FAGSY; Uncharacterized protein
STRINGVIT_11s0037g00040.t014e-98(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-52LJRHL1-like 1