PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0559s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 639aa    MW: 68548.1 Da    PI: 5.236
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0559s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.36.2e-27209262155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +pr++W+++LH++Fv+av+qL G++kA+Pk+il++m+ ++Lt+e+v+SHLQkYR+
  Kalax.0559s0023.1.p 209 RPRVVWNSDLHRKFVSAVNQL-GIDKAVPKKILDIMDDESLTRENVASHLQKYRM 262
                          59*******************.********************************8 PP
2Response_reg79.98.4e-27211291109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+++ +  l+++l++ ++ +v+++  ++ea+ell++++  +D+++ D++mp++dG++ll++i  e  +lp+i+++++++++++++
  Kalax.0559s0023.1.p  21 VLCVDDDQTCLLWLENLLTSCQF-NVTTTLYAREAIELLRQNKtmYDIVISDVQMPDIDGFQLLETIGLEM-DLPVIMMSMFNNQDYVTR 108
                          89*********************.***************99999***********************6654.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l+Kp+  ee+ +
  Kalax.0559s0023.1.p 109 GVVHGAVDYLVKPVRLEEIQN 129
                          *****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.0E-3718142No hitNo description
SuperFamilySSF521724.27E-3218139IPR011006CheY-like superfamily
SMARTSM004485.9E-2919131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.65820135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.62E-2622135No hitNo description
Gene3DG3DSA:1.10.10.604.1E-28206267IPR009057Homeodomain-like
SuperFamilySSF466892.15E-17207266IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-23210262IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MAAMGQQAKE IDDKFPVGIR VLCVDDDQTC LLWLENLLTS CQFNVTTTLY AREAIELLRQ  60
NKTMYDIVIS DVQMPDIDGF QLLETIGLEM DLPVIMMSMF NNQDYVTRGV VHGAVDYLVK  120
PVRLEEIQNI WQHVLRKRKG VGNGKKLATL DNKSSQGAAA NGAVADSAAS AGEASNKRRR  180
APSDKDDEDY EEEEEDSGRE NEEQTSHKRP RVVWNSDLHR KFVSAVNQLG IDKAVPKKIL  240
DIMDDESLTR ENVASHLQKY RMYLKKISNG NSQQGVFGAL GGRHALDAMS YRGGRLPNSL  300
LSGYPPSLSG ILGARVSPGS GVSFRSISAS DLIQSGQSLR NSINPLAKLQ PSVMPSLQNG  360
SLFQGMMPGG FEQDPSQGGK ALAQLGSYSP GLGATGFGVS DNFVDPKVMM NGSANSSLML  420
PAAAQFPGSA PVPGQLRIGG VPGASGAGFM DRGGALESWK SAGQQPHNSL TGSRTFTQDH  480
NLPMNNNNAM NGIASTGIHQ QLLGFPQMSG NSNLQGENGI NNVDHMKQQE YNQELDNVFG  540
SLNLIIPPGG GGGIMGSVGM DQSHLGAAAN GGDFIGQQTG ILPADANFKP NNDSFVPDQA  600
NANLPQDDFM PNGIDSLDDI VTAMIRRVFL KLHSLLIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23205268164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB8AEH12e-90ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X63e-90ORR23_ORYSJ; Two-component response regulator ORR23
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-82response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]