PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0561s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 291aa MW: 32860.1 Da PI: 8.6942

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0561s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.9	1.3e-55	14	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+kkv+++ +++ +i e+d++k+ePwdLp+++k + +ewyfF+ rdkky+tg r+nrat+sgyWkatgkdk Kalax.0561s0017.1.p 14 LPPGFRFHPTDEELITHYLCKKVSDSGFRA-IAIGEADLNKSEPWDLPRNAKMGGNEWYFFCLRDKKYPTGLRTNRATQSGYWKATGKDK 102 79************************99.88***********9889999******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ ++ lvg+kktLvfy+grapkg k++Wvmheyrle Kalax.0561s0017.1.p 103 EIHR-GKFLVGMKKTLVFYRGRAPKGAKSNWVMHEYRLE 140 9.999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-61	10	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.722	14	164	IPR003441	NAC domain
Pfam	PF02365	9.8E-30	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDRVEGADPD QIELPPGFRF HPTDEELITH YLCKKVSDSG FRAIAIGEAD LNKSEPWDLP 60 RNAKMGGNEW YFFCLRDKKY PTGLRTNRAT QSGYWKATGK DKEIHRGKFL VGMKKTLVFY 120 RGRAPKGAKS NWVMHEYRLE GKLSLQNLPQ TAKTEWVISR VFEKCEGAKK PHFPSLLSQA 180 AFRGHPTGLP PLTDSPPNTS TPRPEQQHAP CFSNQDPLEL ANSFTFWPTQ VDHQSLLNYP 240 NLPPQDQAML TQFLTGQSQT RRPHFKTENA EAGGASSSMG PVDHDCLWNY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-52	4	170	9	174	NAC domain-containing protein 19
3swm_B	5e-52	4	170	9	174	NAC domain-containing protein 19
3swm_C	5e-52	4	170	9	174	NAC domain-containing protein 19
3swm_D	5e-52	4	170	9	174	NAC domain-containing protein 19
3swp_A	5e-52	4	170	9	174	NAC domain-containing protein 19
3swp_B	5e-52	4	170	9	174	NAC domain-containing protein 19
3swp_C	5e-52	4	170	9	174	NAC domain-containing protein 19
3swp_D	5e-52	4	170	9	174	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258290.1	1e-108	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLR3	1e-102	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A1U8A0S9	1e-107	A0A1U8A0S9_NELNU; NAC domain-containing protein 100-like
STRING	XP_010258290.1	1e-108	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-105	NAC domain containing protein 80

Link Out ? help Back to Top
Phytozome	Kalax.0561s0017.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]