PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0567s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 204aa    MW: 23021.9 Da    PI: 7.3715
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0567s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer45.71.5e-142164854
          ZF-HD_dimer  8 eClkNhAa.slGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHR 54
                          ClkNhA  +  g+++DGC+ f+p     g++++  C ACgCHR FH 
  Kalax.0567s0018.1.p 21 ACLKNHARpKERGQSFDGCQQFTPR----GDVNSYVCDACGCHRAFHQ 64
                         6******736789***********9....899***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152315.821966IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.2E-112164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-52264IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.5E-5101157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MENNNDGSYL PIVPYVDVSG ACLKNHARPK ERGQSFDGCQ QFTPRGDVNS YVCDACGCHR  60
AFHQVILRET REEPQLLPLL DNLERGLNRP IRHSRIPPQP NVVRRKARTK VSPYEEIIME  120
YVTDIIGWNP RQQDKNEANK LCEDLNISRA YYLGWIRDMK MLRDTERQAA RVEAERAARA  180
AREADEAAAA AGSLLLLGNS SSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.13e-14homeobox protein 26