PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0568s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 162aa MW: 17150.1 Da PI: 4.5257

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0568s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.7	1.9e-15	5	54	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r + + +Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++l+g Kalax.0568s0010.1.p 5 PRYRGIRARGT--KWVSEIREPRK---TNRIWLGTYPTPEMAAAAYDTAALALRG 54 68**97765..9***854...49**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.4E-9	5	54	IPR001471	AP2/ERF domain
CDD	cd00018	1.70E-15	5	63	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.4E-26	6	63	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.612	6	62	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-26	6	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-18	6	62	IPR016177	DNA-binding domain
PRINTS	PR00367	4.3E-7	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-7	44	64	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MHTHPRYRGI RARGTKWVSE IREPRKTNRI WLGTYPTPEM AAAAYDTAAL ALRGSDAVLN 60 FPEFGNMYPA PASLSAADIR AAAEAAAAQR LPQPVDEAVQ GGGGGQTGVD QEYVDEDAIF 120 DMPNYLAEMA EGMMVSPPRI KPPGGDDPGE GSSSGGLWGY P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-14	4	67	12	77	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278525.1	1e-56	PREDICTED: ethylene-responsive transcription factor ERF026-like
Swissprot	Q9FJ90	7e-45	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1U8BN80	3e-55	A0A1U8BN80_NELNU; ethylene-responsive transcription factor ERF026-like
STRING	XP_010278525.1	6e-56	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	5e-30	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.0568s0010.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]