PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0568s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 331aa MW: 36927.6 Da PI: 7.5824

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0568s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.2	1.3e-52	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+kv++++l++ + ik +diyk++PwdLp k++++ekewyfF++rd+ky++++r+nr+t g+Wkatg+d+ Kalax.0568s0017.1.p 5 MLPGFRFHPTDEELVGFYLKRKVQHRPLPV-DLIKPLDIYKHDPWDLP-KMASREKEWYFFCPRDRKYRNSTRPNRVTGGGFWKATGTDR 92 579*************************.99***********.778899******************************* PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ g+ +glkk+Lvfykgra kg+ktdW+mhe+rl Kalax.0568s0017.1.p 93 PIYSSegPGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRL 132 9766778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-58	4	165	IPR003441	NAC domain
PROSITE profile	PS51005	57.226	5	165	IPR003441	NAC domain
Pfam	PF02365	7.1E-27	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEDTMLPGFR FHPTDEELVG FYLKRKVQHR PLPVDLIKPL DIYKHDPWDL PKMASREKEW 60 YFFCPRDRKY RNSTRPNRVT GGGFWKATGT DRPIYSSEGP GKCIGLKKSL VFYKGRAAKG 120 TKTDWMMHEF RLPLADDQPV LHSKRFMDRS IPANDAWAIC RIFKKTSATA VRAATQGWAC 180 CSAFQLAAPE DDARDSGFIS GSISFAPPES HPVQTTSFSQ NVMIQIDSDV HFNFTSYALT 240 QKPPGATNWG APHHQPPPSS LIHAAATAPD NARLCDSQGP QSITRISPAS SQPVISDYEA 300 YFDDQLGIDL SAEDGNSFDL PLNLSDAWRS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-49	7	168	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-49	7	168	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-49	7	168	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-49	7	168	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-49	7	168	22	171	NAC domain-containing protein 19
3swm_B	3e-49	7	168	22	171	NAC domain-containing protein 19
3swm_C	3e-49	7	168	22	171	NAC domain-containing protein 19
3swm_D	3e-49	7	168	22	171	NAC domain-containing protein 19
3swp_A	3e-49	7	168	22	171	NAC domain-containing protein 19
3swp_B	3e-49	7	168	22	171	NAC domain-containing protein 19
3swp_C	3e-49	7	168	22	171	NAC domain-containing protein 19
3swp_D	3e-49	7	168	22	171	NAC domain-containing protein 19
4dul_A	3e-49	7	168	19	168	NAC domain-containing protein 19
4dul_B	3e-49	7	168	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313927.1	2e-99	protein FEZ-like
Refseq	XP_012481219.1	2e-99	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-90	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2R6RFD0	2e-99	A0A2R6RFD0_ACTCH; Protein FEZ like
STRING	Lus10036749	1e-100	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	4e-93	NAC family protein

Link Out ? help Back to Top
Phytozome	Kalax.0568s0017.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]