PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0568s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 98aa    MW: 10733 Da    PI: 8.7945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0568s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.7e-0824641454
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         d++ +   +L +l+P+ + + +s K+s + +L+++++YI+sL
  Kalax.0568s0022.1.p 24 DQMADLVCKLHRLIPEiQ-SSRSSKVSASKVLQETCNYIRSL 64
                         577888899*******77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.4581064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-82482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-72468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-52564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSSRRSRSR QSSSGGSRNN ISEDQMADLV CKLHRLIPEI QSSRSSKVSA SKVLQETCNY  60
IRSLHQEIDD LSDRLAHLLA SSDTDSAQAA IIRSLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222213.13e-38PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX18e-32PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2P5AUN06e-38A0A2P5AUN0_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
TrEMBLA0A2P5FQ946e-38A0A2P5FQ94_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGEMJ281141e-36(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-26bHLH family protein