PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0568s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 421aa    MW: 47356.4 Da    PI: 9.6168
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0568s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-1271127155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  ++n  +r k  + g ++ +e Aa+a++ a+ k++g
  Kalax.0568s0025.1.p  71 SKFRGVSRHRWTGRFEAHLWDkGTWNPtQRkKGKQ-GAYDDEESAARAYDLAAIKYWG 127
                          79*******************77777786635555.99***9**************98 PP
2AP250.45.4e-16170221155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Kalax.0568s0025.1.p 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 221
                          89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.02E-1871137No hitNo description
SuperFamilySSF541713.01E-1471137IPR016177DNA-binding domain
PfamPF008474.0E-871127IPR001471AP2/ERF domain
SMARTSM003801.4E-1872141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1272136IPR001471AP2/ERF domain
PROSITE profilePS5103217.95272135IPR001471AP2/ERF domain
PRINTSPR003672.6E-57384IPR001471AP2/ERF domain
CDDcd000181.42E-24170231No hitNo description
SuperFamilySSF541711.5E-17170231IPR016177DNA-binding domain
PfamPF008472.1E-11170221IPR001471AP2/ERF domain
SMARTSM003805.1E-26171235IPR001471AP2/ERF domain
PROSITE profilePS5103218.716171229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18171230IPR001471AP2/ERF domain
PRINTSPR003672.6E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDTTTVKSEG SSVGHSTSMV DNAIVTNKST KRRRRDHRVP AIVLPSSSNS EGNLQLLHHV  60
AQSPTAAKRS SKFRGVSRHR WTGRFEAHLW DKGTWNPTQR KKGKQGAYDD EESAARAYDL  120
AAIKYWGPST FTNFPASDYE KEIELMKNIT KEEYLATLRR RSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYSTQEEAAH AYDIAAIEYR GVNAVTNFDL STYIRWLRPG  240
GPTPTDPQDP ILNTMENKPP QLLFNQFRTQ QADMSQLNSL NYKPDDFTSP KRQDFSQTKF  300
PSSSNPRINP SSPTALGLLL RSSVFRNLVQ QNSTASEECP YLEALNSNTQ QSNQMNEDDE  360
LGRILFQEAG ITNPFTFSSA ETTLPDMTSP NSHSTPLYNP ETQSLWTSTL NLSPSTHYPS  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022775800.11e-153AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2R6RFB41e-155A0A2R6RFB4_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_01s0026g01690.t011e-145(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-81AP2 family protein