PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0569s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 203aa MW: 23378.7 Da PI: 9.0311

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0569s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.8	3.5e-12	123	196	19	98
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +++h + ++e+ ++tlede+g++ k+ + ++ l++GW+ F +++L +gD +vF+l++ ++f +v ++r Kalax.0569s0012.1.p 123 VKPMVQSHAHMPKEDEMITLEDEDGNESPSKYLADITR----LSGGWRCFTLDHELVDGDALVFQLIRPTKF--KVYIIR 196 5777888866677888**************666666....***********************97777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-17	115	198	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-13	117	198	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.32E-17	120	196	No hit	No description
SMART	SM01019	3.8E-11	122	198	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-10	124	196	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.093	140	198	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVVSATSNYE ELRRQRLEEK KKRMEEVNLL NLSKSLSAAT PKSSPAKHRK PKSARKEVNL 60 SAVRRFRRMA GKSRPDYKEG MRLMLSREDL LNHVYASHES RMSAVERAEQ LESELGSEYP 120 CFVKPMVQSH AHMPKEDEMI TLEDEDGNES PSKYLADITR LSGGWRCFTL DHELVDGDAL 180 VFQLIRPTKF KVYIIRVNEH EN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019074156.1	2e-76	PREDICTED: B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	8e-55	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	F6HQC1	3e-75	F6HQC1_VITVI; Uncharacterized protein
STRING	VIT_03s0063g00620.t01	4e-76	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-48	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0569s0012.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]