PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0569s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 27749.7 Da    PI: 9.9708
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0569s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.7e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k ienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl +y++
  Kalax.0569s0019.1.p  9 KMIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTKGKLSDYAT 59
                         68***********************************************86 PP
2K-box96.83.3e-3283171997
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          ++ + + s++ e+a+Lk++ ++Lq++q h++GedL+sL+lkeLq+Le+qLe++lk+iR+kK++l++e+i++l+kk k+lqe+n++L k+
  Kalax.0569s0019.1.p  83 TDIESNGSWHLEHARLKARSDTLQKKQSHYMGEDLNSLTLKELQNLENQLENALKHIRAKKSQLMFESISDLKKKDKALQEQNTKLAKQ 171
                          45566789******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.45E-37276No hitNo description
SuperFamilySSF554553.92E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003198.8E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.3E-2787171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.21888181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVQMKM IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIIFST KGKLSDYATD  60
SCMGRILERY ERYSSAEMQL VATDIESNGS WHLEHARLKA RSDTLQKKQS HYMGEDLNSL  120
TLKELQNLEN QLENALKHIR AKKSQLMFES ISDLKKKDKA LQEQNTKLAK QPLQIKEKEK  180
SQGTLLDQQS HAASPASLRA PQICLEPLTV SRGNGYHGAG DGGAASSALH QTNATTLLPR  240
WMLSQLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-20185184MEF2 CHIMERA
6byy_B7e-20185184MEF2 CHIMERA
6byy_C7e-20185184MEF2 CHIMERA
6byy_D7e-20185184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312134.11e-102agamous-like MADS-box protein AGL8 homolog
SwissprotQ424293e-96AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S3YGF61e-100A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
TrEMBLQ8GT991e-101Q8GT99_TOBAC; MADS11
STRINGXP_009792071.11e-101(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-82AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]