PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0569s0019.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23507.3 Da    PI: 10.3748
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0569s0019.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.2e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k ienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl +y++
  Kalax.0569s0019.3.p  9 KMIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTKGKLSDYAT 59
                         68***********************************************86 PP
2K-box73.17.9e-2583149975
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                          ++ + + s++ e+a+Lk++ ++Lq++q h++GedL+sL+lkeLq+Le+qLe++lk+iR+kK  l+ +
  Kalax.0569s0019.3.p  83 TDIESNGSWHLEHARLKARSDTLQKKQSHYMGEDLNSLTLKELQNLENQLENALKHIRAKKVYLIDN 149
                          45566789*****************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.63E-36276No hitNo description
SuperFamilySSF554552.49E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-1987147IPR002487Transcription factor, K-box
PROSITE profilePS5129712.08188168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGRVQMKM IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIIFST KGKLSDYATD  60
SCMGRILERY ERYSSAEMQL VATDIESNGS WHLEHARLKA RSDTLQKKQS HYMGEDLNSL  120
TLKELQNLEN QLENALKHIR AKKVYLIDNL MLCTHTQLVA KQAGTTELIY MSYLRRVSSC  180
LSPFPTSKRR IRHCRSRILS LPSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-20185184MEF2 CHIMERA
6byy_B7e-20185184MEF2 CHIMERA
6byy_C7e-20185184MEF2 CHIMERA
6byy_D7e-20185184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080420.17e-78truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_020537425.17e-78truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ424296e-74AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A067KHQ82e-76A0A067KHQ8_JATCU; Uncharacterized protein
TrEMBLA0A2R6QHB03e-75A0A2R6QHB0_ACTCH; Agamous-like MADS-box protein
STRINGXP_002514623.13e-75(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]