PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0578s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 835aa    MW: 92217 Da    PI: 6.673
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0578s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-191775357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0578s0014.1.p 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLVRECpilfNIEPKQIKVWFQNRRCREKQ 75
                         5679*****************************************************97 PP
2START168.54.4e-531613692205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++  ++g++++ +++ s++++g a+ra+g+v  +++++ve l d++  W ++++++++++v+ ++  g
  Kalax.0578s0014.1.p 161 IAEETLTEFISKATGTAVEWVQMPGVKPGPDSIGIIAISHGCTGVAARACGLVSLEPTEVVEVLKDRP-SWFRDCRAVDVVNVLPTAngG 249
                          789*******************************************************6666666666.****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+  Ry+  +++g++v++++S+ ++q+ p+    +s+vRae l Sg+li+p+++g+s +++v+hvdl+ r
  Kalax.0578s0014.1.p 250 TIELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVVCERSLKHTQNGPNvptVQSFVRAEILSSGYLIRPCDGGGSIIHIVDHVDLEPR 339
                          *************************************************999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s ++ ++k+++a+l+++++
  Kalax.0578s0014.1.p 340 SVPEVLRPLYESPTILAQKMTMAALRQLRQ 369
                          *************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-18775IPR009057Homeodomain-like
PROSITE profilePS5007115.6291276IPR001356Homeobox domain
SMARTSM003896.7E-161480IPR001356Homeobox domain
SuperFamilySSF466893.51E-171680IPR009057Homeodomain-like
CDDcd000864.56E-171777No hitNo description
PfamPF000461.5E-161875IPR001356Homeobox domain
CDDcd146861.26E-569108No hitNo description
PROSITE profilePS5084825.559151351IPR002913START domain
CDDcd088752.80E-72155369No hitNo description
Gene3DG3DSA:3.30.530.207.0E-22159366IPR023393START-like domain
SMARTSM002345.0E-38160370IPR002913START domain
SuperFamilySSF559613.02E-36160370No hitNo description
PfamPF018521.2E-50161369IPR002913START domain
PfamPF086703.1E-51691832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MMSMSCKDSK HVMDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLVRE CPILFNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLN AMNKLLIEEN DRLQKQVSQL VCENGYFRQR  120
NQNPKSATKD TSCESVVTNG QHQLVLQNPP RDASPAGLLS IAEETLTEFI SKATGTAVEW  180
VQMPGVKPGP DSIGIIAISH GCTGVAARAC GLVSLEPTEV VEVLKDRPSW FRDCRAVDVV  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLMRYTSVME DGSLVVCERS LKHTQNGPNV  300
PTVQSFVRAE ILSSGYLIRP CDGGGSIIHI VDHVDLEPRS VPEVLRPLYE SPTILAQKMT  360
MAALRQLRQM AYEVSPPNAT NWSRKPAALH ALSNRLSRGF NEALNGFSDE GWIAMGNDGM  420
DDVAILVNSS PNKLMGLNLS FGNGFSPVCN TVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKAGPCNL PGIRVGGFGG QVILPLAHTI EHEELLEVIK LECVGHCPED  540
AMMPRDMFLL QMCSGVDEHA VGTCSELIFA PIDASFTDDT PLLPSGFRII PLESVRDSSS  600
PNRTLDLASA LETGTRTSND CSLKSGSTQS VMSIAFQFAC ESHMQESVAS MARHYVRSII  660
SSVQRVALAL SPNLSSNGLL RSPSQTPEAK TLSRWICTSY RYSLGVELLK ASSKSNESML  720
ETLWHHPDAI MCCSLKALPV FTFANQAGLD MLETTTIALQ EMTLDKIFDE QGRRTLCSEL  780
PQIMQQGFSC LPGGICVSIM GRPISYERAV AWKVLNDEDK AHCICFMFVN WSLV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284003.20.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2R6R0060.0A0A2R6R006_ACTCH; Homeobox-leucine zipper protein like
STRINGcassava4.1_001674m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]