PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0579s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 264aa MW: 29403 Da PI: 10.3746

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0579s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.5e-12	118	163	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE + ++++ k+lG g+W+ I++++ Rt+ q+ s+ qk+ Kalax.0579s0010.1.p 118 LPWSEEERKSFLRGLKELGRGNWRGISKEFVRSRTPAQIASHAQKH 163 69******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.368	111	168	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-14	113	168	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-12	115	167	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-9	116	166	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-10	118	163	IPR009057	Homeodomain-like
CDD	cd00167	1.81E-9	119	164	No hit	No description
Pfam	PF00249	4.4E-10	119	163	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
METNDGYGSS EAADRLKPFD VERRTNPEVD RLALTDRSIN LASAFSSGTS ECKESDQFTD 60 GRIDVLAEGL AGKSRSCGTA DFSVGAAPGD RDGYFSDGSR HDKNVRPSAN HSRKNKGLPW 120 SEEERKSFLR GLKELGRGNW RGISKEFVRS RTPAQIASHA QKHFIRQSAP PFKKRRNSLF 180 DIPLKESNVN IFSIFLPPQP HLLVSFSLTL LFDNLQVETQ EKSVAFQPVH PPPSLKLRKG 240 AVSRTHTRFY NGNFKNLEKL LAT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	3e-29	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0579s0010.1.p