PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0588s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 250aa    MW: 29116.4 Da    PI: 8.6506
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0588s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1832118799
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + ++++++ l++pkkf  ++ +k   + t++l+ ++g  W+vk+   k+ + ++l+kGW +Fv ++ L+e D +vF+++g+s+f   v++
  Kalax.0588s0018.1.p  32 QIMANSNSELRVPKKFGMKFPMK--LGETIKLRGPTGDIWRVKV--VKTEEDVLLRKGWPRFVYDHLLNEYDLLVFRYTGSSSF--DVSI 115
                          556788899********999877..7779***************..**********************************9999..9999 PP

                          E-S CS
                   B3  97 frk 99 
                          f++
  Kalax.0588s0018.1.p 116 FDR 118
                          998 PP
2B354.81.7e-17138226198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+  +  ++s+ l +pkk   ++g +++ + t++l+ +sg +W+v    ++ ++ ++l+ GW +Fv+++ L+e Df++F+++g+s+f
  Kalax.0588s0018.1.p 138 FFKVM--NQEFRSK-LLIPKKL--RIGFVEKMGNTIRLKGPSGYVWKVGA--ERAGEDVILGIGWTQFVSDHTLDESDFLIFHYTGDSSF 220
                          78888..7777776.999***8..5777777888****************..**********************************9999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v +f+
  Kalax.0588s0018.1.p 221 --SVLIFD 226
                          ..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-2422121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-2323121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.64826119IPR003340B3 DNA binding domain
CDDcd100179.90E-1728117No hitNo description
SMARTSM010199.1E-1430119IPR003340B3 DNA binding domain
PfamPF023629.9E-1632119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-20134228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.014135228IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-22135233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-13136226No hitNo description
SMARTSM010194.4E-9138228IPR003340B3 DNA binding domain
PfamPF023621.8E-14138226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEMDEREET SRAMEEQIYW NQFESTKHHF FQIMANSNSE LRVPKKFGMK FPMKLGETIK  60
LRGPTGDIWR VKVVKTEEDV LLRKGWPRFV YDHLLNEYDL LVFRYTGSSS FDVSIFDRNA  120
CVKDLRMLQD RFESKPHFFK VMNQEFRSKL LIPKKLRIGF VEKMGNTIRL KGPSGYVWKV  180
GAERAGEDVI LGIGWTQFVS DHTLDESDFL IFHYTGDSSF SVLIFDLSRC EKESSHFVKP  240
AARSTDLRG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-19B3 family protein