PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0588s0027.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 469aa MW: 50769.6 Da PI: 4.9385

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0588s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.7	1.4e-06	13	75	6	56
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft++++ e+e+ + n+ p +e LA+k ++ +qV +WFqN+R+ +k Kalax.0588s0027.1.p 13 RFTPSEVAEMEAILSEhnNKLPPRELFVTLADKFsngperigkiTVQMKQVWNWFQNKRYAMK 75 589999999999998655888999999999999999999999889999***********9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-10	4	80	IPR009057	Homeodomain-like
SMART	SM00389	0.006	7	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	9.329	13	77	IPR001356	Homeobox domain
CDD	cd00086	8.16E-4	13	75	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-6	13	82	IPR009057	Homeodomain-like
Pfam	PF16719	9.7E-36	123	250	IPR032001	SAWADEE domain
CDD	cd00024	0.00908	137	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MGRPPGNGGP AFRFTPSEVA EMEAILSEHN NKLPPRELFV TLADKFSNGP ERIGKITVQM 60 KQVWNWFQNK RYAMKAKSNK SQAAKLDVAP LQAVPPLTPA ALAPALQSVP PVRQEVNGKA 120 PNNMEFEARS ARDGAWYDVA AFLSVRKKDT DDPEVLVRFV GLTPEEDEWI KVSKHVRHRS 180 LPCEASECVA VLPGDLILCF QEAPEQALYF DAHVLDAQRM KHDSRSCRCS FMVRYDHDQF 240 EEVVPLRKIC RRPETDYRLQ IYQALPDLPA QQKKIVQSSA CSAPLEDNPV AESVQMPAQK 300 VDDNTAPASS APSSPVAREK NTAGSLEEGN PGHVTADNAS KLTRKAEESV DQDAETKRPR 360 TSDHTENPVG QDASTPAVMP ESDKQDETQG VADSAVEQKG SSPRQQDPAG PCAVVKEKEA 420 VSNDVAEVDD GDPNPGGGAL TCQNQTNGHT GGSGGGSSDV AVGVQQCF*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MGRPPGNGGP AFRFTPSEVA EMEAILSEHN NKLPPRELFV TLADKFSNGP ERIGKITVQM  60
KQVWNWFQNK RYAMKAKSNK SQAAKLDVAP LQAVPPLTPA ALAPALQSVP PVRQEVNGKA  120
PNNMEFEARS ARDGAWYDVA AFLSVRKKDT DDPEVLVRFV GLTPEEDEWI KVSKHVRHRS  180
LPCEASECVA VLPGDLILCF QEAPEQALYF DAHVLDAQRM KHDSRSCRCS FMVRYDHDQF  240
EEVVPLRKIC RRPETDYRLQ IYQALPDLPA QQKKIVQSSA CSAPLEDNPV AESVQMPAQK  300
VDDNTAPASS APSSPVAREK NTAGSLEEGN PGHVTADNAS KLTRKAEESV DQDAETKRPR  360
TSDHTENPVG QDASTPAVMP ESDKQDETQG VADSAVEQKG SSPRQQDPAG PCAVVKEKEA  420
VSNDVAEVDD GDPNPGGGAL TCQNQTNGHT GGSGGGSSDV AVGVQQCF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	9e-43	123	254	3	134	SHH1 SAWADEE
4iur_B	9e-43	123	254	3	134	SHH1 SAWADEE
4iut_A	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	9e-43	123	254	3	134	SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899221.1	1e-127	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
Swissprot	Q8RWJ7	1e-114	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A2P5AR39	1e-127	A0A2P5AR39_PARAD; Octamer-binding transcription factor
STRING	AET03010	1e-126	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-113	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Kalax.0588s0027.1.p