PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0589s0003.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 398aa    MW: 43199 Da    PI: 9.478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0589s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-055981123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k F r  nL+ H r H
  Kalax.0589s0003.2.p 59 FVCEVCSKGFQRDQNLQLHRRGH 81
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-55881No hitNo description
SMARTSM003550.0435981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9075981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035573101131IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-5131157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDNMTSSPPM ASGAGAEVSI SSAARNPPPK KRRNLPGMPD PNAVVISLSP RSLMATNRFV  60
CEVCSKGFQR DQNLQLHRRG HNLPWRLKQR NSEGEVRWKV YVCPEPSCIH HNPSRALGDL  120
TRIKKHYSRK HGEKKWKCDR RSKKYAVKSD CNAHMKTCGT REYKCDCGTL FSRRDSFITH  180
RAFCDALAEE NTKVQTAALI VDDTKPNEDM VVASSPTPPS PVTPAPTTIS PLLSFQSPDL  240
TDNSAVVTDQ SLATLAASSN SSRCTSYISG KISVFASIFA PSTATTPTSF SHFMSPLSQS  300
DHPLPPSSPK GDTGFNHPLT SPSLYLTCNS FAPFPMIPDL PPDHHHYASR SHKPIMSATA  360
LLQKAAQMGA TTSAGSSLLC GFSLAMPSSS SSTHQVW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-30132194365Zinc finger protein JACKDAW
5b3h_F4e-30132194365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225628.11e-127protein indeterminate-domain 2
RefseqXP_023929769.11e-127protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-106IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A314Z9181e-126A0A314Z918_PRUYE; Protein indeterminate-domain 2
STRINGEMJ268271e-127(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]