PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0589s0003.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 389aa    MW: 42386.1 Da    PI: 9.197
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0589s0003.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-052244123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k F r  nL+ H r H
  Kalax.0589s0003.4.p 22 FVCEVCSKGFQRDQNLQLHRRGH 44
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.9E-52144No hitNo description
SMARTSM003550.0432244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9072244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM00355736494IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.9E-594120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPDPNAVVIS LSPRSLMATN RFVCEVCSKG FQRDQNLQLH RRGHNLPWRL KQRNSEGEVR  60
WKVYVCPEPS CIHHNPSRAL GDLTRIKKHY SRKHGEKKWK CDRRSKKYAV KSDCNAHMKT  120
CGTREYKCDC GTLFSRRDSF ITHRAFCDAL AEENTKVQTA ALIVDDTKPN EDMVVASSPT  180
PPSPVTPAPT TISPLLSFQS PDLTDNSAVV TDQSLATLAA SSNSSRCTSY ISGKISVFAS  240
IFAPSTATTP TSFSHFMSPL SQSDHPLPPS SPKGDTGFNH PLTSPSLYLT CNSFAPFPMI  300
PDLPPDHHHY ASRSHKPIMS ATALLQKAAQ MGATTSAGSS LLCGFSLAMP SSSSSTHQGL  360
RLGLGFPASD LYVQPTTLDL LGLTKTRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3095157365Zinc finger protein JACKDAW
5b3h_F4e-3095157365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664668.11e-122PREDICTED: protein indeterminate-domain 2 isoform X2
SwissprotQ9LVQ71e-103IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A438K1P91e-121A0A438K1P9_VITVI; Protein indeterminate-domain 1
STRINGVIT_18s0001g12220.t011e-120(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.18e-92indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]