PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0589s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 91aa    MW: 10139.3 Da    PI: 9.1835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0589s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09952344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +++ +a +++  +   +W  Ia+ +g g++++++k ++
  Kalax.0589s0011.1.p  9 SWTAKQNKQFEKALALHDRDtpeRWQNIAKAVG-GKSAEEVKRHY 52
                         7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-7658IPR001005SANT/Myb domain
PROSITE profilePS500906.26856IPR017877Myb-like domain
SuperFamilySSF466892.48E-12864IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-6958IPR009057Homeodomain-like
CDDcd001671.13E-7952No hitNo description
PfamPF002491.2E-7952IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASRSCSSSW TAKQNKQFEK ALALHDRDTP ERWQNIAKAV GGKSAEEVKR HYDILVEDLM  60
HIESGQVPLP NYRNSGSNGR GLTDEQRLAK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-34288387RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251677.12e-46PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1739e-39RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A162A4Z75e-45A0A162A4Z7_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s03640.16e-45(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-41RAD-like 6