PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0591s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 653aa    MW: 70521.9 Da    PI: 6.8344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0591s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215274123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H+r+H
  Kalax.0591s0020.1.p 52 HVCTLCGKGFRSGKALGGHMRVH 74
                         79*******************99 PP
2zf-C2H211.50.00092126144321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          Cp+C + F+++  L  H+r
  Kalax.0591s0020.1.p 126 CPICRRDFPSNKALFGHMR 144
                          ******************8 PP
3zf-C2H212.60.00043440462123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+Fs++  L  H ++H
  Kalax.0591s0020.1.p 440 YKCTTCNKTFSSHQALGGHKSSH 462
                          9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-45175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.63E-85274No hitNo description
SMARTSM003550.00635274IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-85274IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2195279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-8119146No hitNo description
SMARTSM003550.089124146IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-6125148IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-7439462No hitNo description
PfamPF139123.4E-9439463IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.323440467IPR007087Zinc finger, C2H2
SMARTSM003550.015440462IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280442462IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-7510537No hitNo description
SMARTSM003553.1515537IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-8515539IPR007087Zinc finger, C2H2
PROSITE patternPS000280517537IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MSDREPESGK SRSSATSGGG KLKIKIKLLE RRSCESDRIR DQDVVKEEEE EHVCTLCGKG  60
FRSGKALGGH MRVHAKRDRS DQLKTTHQGI DPAAAAVYSS DMYDEEEVKG SCDDELQIKG  120
GRKPICPICR RDFPSNKALF GHMRCHPERT WRGIQPPVYS SSSTVSDDKS DNDGGGDHHF  180
EKGVVDLEKD LLNFGWGAKD RRDREGTVKS FAPSQTGCQI VFGNTSVQSI APEQAVGVQS  240
LILLSRGGVD KKRREIKSRP LPAGPGIRDS VNFTRKLKLC GAGAVATESR GRADHDSQRG  300
KKRKASQVLA AEEVCILTDS SVKRFKFANE KDDEGSTAGV QDLIMESDPL HQLTARRPMV  360
SAADGGADVI SSLDQKDDAT PHGYNAADLI ESKKMQKVRK YLMITDLKPM TANLLHSSPV  420
NPAGRQVVNM EVPVPDNERY KCTTCNKTFS SHQALGGHKS SHNKLRNPQN SIRNNELPHS  480
DNVTAQVGES SNAEAGASHN SRIIMAAATH DHAIHQCNVC FKIYPTGQAL GGHKRLHCSL  540
IINKAPPLPA PSNMVISEPA EAAPLPPPPS IIIPEPAEEA AHSPPAAPVA QTSDDVRGAL  600
CRFDLNELPA LEDEDDEDVI IQPADNTAAA QPQEEVGDDH AAAHHGPGSP PA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-18C2H2 family protein