PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0599s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 337aa    MW: 37097.8 Da    PI: 10.3916
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0599s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.72.9e-36782223135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...........eaesssss 81 
                          +k d  ski T++g+RdRRvRls+ +a++fFdLqd LGfdk+s t+eWLl+++ +ai el   ssss s             +  ss   
  Kalax.0599s0009.1.p  78 KKSDNRSKIRTAKGLRDRRVRLSIGIARKFFDLQDLLGFDKPSRTLEWLLKNSSKAILELSAASSSSTSPQgkaaagvvdgfKGLSS--- 164
                          68999*********************************************************9666663333222233333322222... PP

                  TCP  82 asnsssg.........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                                +         +a+  +  +  k+ k++a+al lakesr+kararar rt+ k ++  k
  Kalax.0599s0009.1.p 165 ------SrsttaystnQAELLSCdTALKTMKRKAAALLLAKESRKKARARARARTAAKLHTAAK 222
                          ......133344444433333333556666777778*********************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.18579137IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-3279216IPR005333Transcription factor, TCP
PROSITE profilePS513709.726199216IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLSSSLLDIV AGSSNTLHHH HQHLQESLYS HIFSDHNAGY NLHHPNPVAK DLQDDHVPLN  60
SGRVTIITPE PAVALSKKKS DNRSKIRTAK GLRDRRVRLS IGIARKFFDL QDLLGFDKPS  120
RTLEWLLKNS SKAILELSAA SSSSTSPQGK AAAGVVDGFK GLSSSRSTTA YSTNQAELLS  180
CDTALKTMKR KAAALLLAKE SRKKARARAR ARTAAKLHTA AKSLDHQKSR MLNNHTPYLS  240
ADRHYFSSSS LIKLLDNEIQ KEEMKAGGGE EQHKQKLQFQ LHNYNYGIRS HFESALNPSL  300
SLDWDISSVL PPPSSSAAPK SNFSGDIDIY SRANWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1484137154Putative transcription factor PCF6
5zkt_B4e-1484137154Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.29e-21TCP family protein