PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0599s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 218aa    MW: 23802.3 Da    PI: 8.3347
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0599s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-294104196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C++ p++     p++q++++ +++k++G++ +l+l++a+p + r+++++sl+yeA  r+ +P+yG vg+++++++
  Kalax.0599s0012.1.p   4 SCNGCRVLRKGCTDSCTIKPCLqwiktPEAQANATLFLAKFYGRAGLLNLIDAAPSHLRPAVFRSLLYEASGRILNPIYGPVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelal 96 
                          ql+q++++ +l
  Kalax.0599s0012.1.p  94 QLCQAAVDCVL 104
                          *****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3883109IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-244101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTDSCT IKPCLQWIKT PEAQANATLF LAKFYGRAGL LNLIDAAPSH  60
LRPAVFRSLL YEASGRILNP IYGPVGLLWS GSWQLCQAAV DCVLNGLPIT PINSEAAETP  120
HGPPLKTCDI RHVSKDLHKV KSRCRFKRSD SKQAVVNKID RKPEPEKNRS ASHDSTVSHP  180
AEPVWHFEEP SRDSESVLSG ETDAAVAGFD LELSLGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077434.13e-96LOB domain-containing protein 41-like
RefseqXP_027077531.13e-96LOB domain-containing protein 41-like
SwissprotQ9M8861e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A218VVC66e-96A0A218VVC6_PUNGR; Uncharacterized protein
TrEMBLA0A2I0L4R46e-96A0A2I0L4R4_PUNGR; Uncharacterized protein
STRINGVIT_14s0006g02950.t012e-93(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-82LOB domain-containing protein 41