PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0599s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 167aa    MW: 18368.1 Da    PI: 8.3811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0599s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.67.6e-3710100191
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk lrrkC++dC+lapyfp+++p++fa vhk+FGa+n+ k+l+++p + r +a++++++eA +r+ dPvyG++g+i+klqqq++q+
  Kalax.0599s0014.1.p  10 RCAACKCLRRKCPADCILAPYFPSSNPQRFAPVHKVFGAANMAKMLEQVPAHLRGQAADCMIFEAAMRMIDPVYGSAGIISKLQQQIKQM 99 
                          6***************************************************************************************98 PP

               DUF260  91 k 91 
                          +
  Kalax.0599s0014.1.p 100 Q 100
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9989110IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3610100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSSNHSSSTR CAACKCLRRK CPADCILAPY FPSSNPQRFA PVHKVFGAAN MAKMLEQVPA  60
HLRGQAADCM IFEAAMRMID PVYGSAGIIS KLQQQIKQMQ IMKIQGEVAL HQAQTILHLQ  120
QLGDKSNTDP GASRRADADS NNGQHYELDL DEFYVNFISS LNPKPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-301110012101LOB family transfactor Ramosa2.1
5ly0_B6e-301110012101LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892504.12e-48LOB domain-containing protein 24-like
SwissprotP594671e-35LBD23_ARATH; LOB domain-containing protein 23
TrEMBLA0A1U8B9X82e-43A0A1U8B9X8_NELNU; LOB domain-containing protein 24-like
TrEMBLA0A2R6QBX83e-43A0A2R6QBX8_ACTCH; LOB domain-containing protein
STRINGXP_010278070.13e-44(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.14e-26LOB domain-containing protein 24