PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0605s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 219aa    MW: 23367.2 Da    PI: 10.4552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0605s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.3e-201867255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a+ +++g
  Kalax.0605s0013.1.p 18 HFRGVRKRP-WGRYAAEIRDPKK---KSRVWLGTFDTAEEAARAYDTAAIEFRG 67
                         69*******.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-221876IPR016177DNA-binding domain
PfamPF008472.0E-131867IPR001471AP2/ERF domain
PROSITE profilePS5103224.3421875IPR001471AP2/ERF domain
SMARTSM003806.1E-381881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-321875IPR001471AP2/ERF domain
CDDcd000181.95E-321875No hitNo description
PRINTSPR003674.3E-111930IPR001471AP2/ERF domain
PRINTSPR003674.3E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAPTTAQKKA AGGEKGVHFR GVRKRPWGRY AAEIRDPKKK SRVWLGTFDT AEEAARAYDT  60
AAIEFRGAKA KTNFPFPALG RPPALPQHNL SPSQSSTVES SSRESHTPAA SAAPSAVFGS  120
PMRFPFHNFQ LAAGSPIAGV LQPNMFFFDP VTRPARSVTF QPYPNLKSAV AVSSAAVNFH  180
GPAYSDSDSS SVLDTSNPTS RPPVLDIDLN FPPPDNTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-231576264ATERF1
3gcc_A7e-231576264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026396826.13e-48ethylene-responsive transcription factor 4-like
TrEMBLA0A3Q7ICU71e-45A0A3Q7ICU7_SOLLC; Uncharacterized protein
TrEMBLQ84LQ68e-46Q84LQ6_SOLLC; Ethylene response factor 2
STRINGSolyc10g009110.1.12e-46(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-24ERF domain protein 11