PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0605s0014.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 822aa MW: 90478.2 Da PI: 4.7629

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0605s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	361	381	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++a+ G+C G++C+F H+ Kalax.0605s0014.1.p 361 ICDYYAK-GWCIKGNSCRFLHV 381 6****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.68	356	383	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	356	380	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.007	356	382	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-4	361	384	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-5	361	381	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MSFDAFSNDG DDLTRSNSHP FGDDHNGGSY TGYDPRQASQ RYDGAFGDGI VDEDYVAVGG 60 GDQTPFGFDA GVTVEHETVD DGGEIYGFGS GSANPSYGQF ESVPVSNGNG QAYDLGEDGP 120 VLPPPSEMQE EGYALREWRR LNANGLTEKE RIEKEMRSGE RVEEEEDTEE DPEEEEFEED 180 PEEEEEVADD APVTDVYPLS CETKDAETLT PLSTIGTEMA MYENSGLVIM QEGGVEDMEL 240 DSEENIVHGS DVDGTVVDSV PVPVPKNIAV NTHQEVSFTP GTDALSNMTV IAESLNSSTA 300 QRGETTLNHE LKVEDGGKYM NLDLKDHAVP KASRMVATSR NKRSSSFSTQ LMDTNKRPAI 360 ICDYYAKGWC IKGNSCRFLH VKEDKNYTNK QPERGLASAN GEKHVGKGAG YDTKSIYQEP 420 HAESHTRQLH VEFNYSSHEP RFLHFVKPEF SRGLVASSSA FIGRFGPSSN VTESIDYRGN 480 QHLFNDPLQS IADRYIKQHL PPPSTTGKFS SRQISTADGS SNSAISLSSN PFDGQKILSG 540 GMDFNASSVS LGSRPLRDLS NSIELTLKVE MYKWEPSRPF RPSYYISIPH MSSPGSMYDP 600 LRDGIEQASL GVGSFKAELI HYPSHQRYPD FASEGIHFDM DKYNGAVLDK NGHSHVTGLQ 660 VAEAEVAESS VADQCNRGIA HEGDNMSGTS RRKEISETNK TNTSSAGKKN KRNKEKIHQS 720 KQVDADRGLD EAEQREPKTS KQFRAALVEF IKELLKPAWR DGNLSKDAHN LVVKKAVEKV 780 LSSLHSHQVP STPELVQQYL SSSKAKITKL VEAYVQKHNK T*

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MSFDAFSNDG DDLTRSNSHP FGDDHNGGSY TGYDPRQASQ RYDGAFGDGI VDEDYVAVGG  60
GDQTPFGFDA GVTVEHETVD DGGEIYGFGS GSANPSYGQF ESVPVSNGNG QAYDLGEDGP  120
VLPPPSEMQE EGYALREWRR LNANGLTEKE RIEKEMRSGE RVEEEEDTEE DPEEEEFEED  180
PEEEEEVADD APVTDVYPLS CETKDAETLT PLSTIGTEMA MYENSGLVIM QEGGVEDMEL  240
DSEENIVHGS DVDGTVVDSV PVPVPKNIAV NTHQEVSFTP GTDALSNMTV IAESLNSSTA  300
QRGETTLNHE LKVEDGGKYM NLDLKDHAVP KASRMVATSR NKRSSSFSTQ LMDTNKRPAI  360
ICDYYAKGWC IKGNSCRFLH VKEDKNYTNK QPERGLASAN GEKHVGKGAG YDTKSIYQEP  420
HAESHTRQLH VEFNYSSHEP RFLHFVKPEF SRGLVASSSA FIGRFGPSSN VTESIDYRGN  480
QHLFNDPLQS IADRYIKQHL PPPSTTGKFS SRQISTADGS SNSAISLSSN PFDGQKILSG  540
GMDFNASSVS LGSRPLRDLS NSIELTLKVE MYKWEPSRPF RPSYYISIPH MSSPGSMYDP  600
LRDGIEQASL GVGSFKAELI HYPSHQRYPD FASEGIHFDM DKYNGAVLDK NGHSHVTGLQ  660
VAEAEVAESS VADQCNRGIA HEGDNMSGTS RRKEISETNK TNTSSAGKKN KRNKEKIHQS  720
KQVDADRGLD EAEQREPKTS KQFRAALVEF IKELLKPAWR DGNLSKDAHN LVVKKAVEKV  780
LSSLHSHQVP STPELVQQYL SSSKAKITKL VEAYVQKHNK T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-22	C3H family protein

Link Out ? help Back to Top
Phytozome	Kalax.0605s0014.1.p