PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0605s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LSD

Protein Properties

Length: 399aa MW: 42228.5 Da PI: 4.2753

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0605s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37	5.7e-12	302	326	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++VRC +C+tV Kalax.0605s0024.1.p 302 CGSCRSLLSYPKGAKYVRCLCCQTV 326 ************************9 PP
2	zf-LSD1	28.3	2.8e-09	340	364	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+Y +G p+VRC++C+++ Kalax.0605s0024.1.p 340 CGRCAVLLMYYYGCPAVRCSNCQFI 364 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-13	299	329	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-9	302	326	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.5E-5	337	367	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-6	340	364	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MSGVKEEEGE DVKEVKQEEV LRPPVPLLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC 60 PTASVGDFLG ENRGVDPMEM KMGDELSIPE EGDDDAGLPP GWGAARTKVK GIFLPPESIE 120 TDGMKLEIEV EELKPSFSSE VNDKGSRLAG GEAADTEDGG SVVSLGEEKV GGVSGAEDED 180 GPPPGWEAAV TNDLGPGSSV ETIPLEIKME EVQPTKGKLG VADAEKDDDD DDGPPPGWEA 240 AATNNGGAEK EPLVKQESCK LEKGKEKECP PPCREPMAAP APRPPLPSKP LDATSEMGQV 300 VCGSCRSLLS YPKGAKYVRC LCCQTVSFVL EAHQVGQVYC GRCAVLLMYY YGCPAVRCSN 360 CQFITQVGPH NRRPPLSEQG GTLQSQLALL RPTKSVAQ*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MSGVKEEEGE DVKEVKQEEV LRPPVPLLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC  60
PTASVGDFLG ENRGVDPMEM KMGDELSIPE EGDDDAGLPP GWGAARTKVK GIFLPPESIE  120
TDGMKLEIEV EELKPSFSSE VNDKGSRLAG GEAADTEDGG SVVSLGEEKV GGVSGAEDED  180
GPPPGWEAAV TNDLGPGSSV ETIPLEIKME EVQPTKGKLG VADAEKDDDD DDGPPPGWEA  240
AATNNGGAEK EPLVKQESCK LEKGKEKECP PPCREPMAAP APRPPLPSKP LDATSEMGQV  300
VCGSCRSLLS YPKGAKYVRC LCCQTVSFVL EAHQVGQVYC GRCAVLLMYY YGCPAVRCSN  360
CQFITQVGPH NRRPPLSEQG GTLQSQLALL RPTKSVAQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-34	lsd one like 2

Link Out ? help Back to Top
Phytozome	Kalax.0605s0024.1.p